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GT14952

CSHL Arabidopsis genetrap mutant lines

Original: GT14952

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14952

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19381391 [Map]; Strand: c
      • AT5G47850.1 - [+] show detail - CRINKLY4 related 4
        Distance: -309; Region: promoter
      • AT5G47860.1 - [+] show detail - Protein of unknown function (DUF1350)
        Distance: -128; Region: promoter
    Flanking Genome Sequence: GT14952 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATAATA GGGCTTGTAC 
    AAATCCTTCA TGAGAGGATG ACACTCTTCG TCATTTAATG AAAGCAAATG 
    TGGCCCATTA AGTATAATTG AAGCCCAATC ACCTTTTACA CAATTAACAA 
    TTAAGTATTT GGTCTCATCA CAATGTTTGC GTTAGCTGCG AAACAAGATG 
    CTGTTACAGT CATAGAAGTC TTATGCGTAC ACGACTCCGA TTTCAAAATC 
    TGAACGGAAT ATAAACTCTC GACGACGAAA ATCTCAAAAT ACCCAAAATC 
    TCCTCCGACT CCGAGCTATG GCTACGTGTT CCATCTTGCC GTCACCGTCT 
    TTCTCTCCCC GCCGGCGATT CTGTAGCTTT TCTCACAATC GCCGGTCTCT 
    ACCTTCAATA TTCAGTTTCA ACAAAGAGCG TGTCTCACGA AGAGTCTTCT 
    GTAGCTCCAA AGAGAACGAT ATAAACAGAG ATCGGAACCA GTCTACCGGA 
    ATTCAAGTCT ACGGAGAAAT CGAGAGGTAA AGCCACTCTT GTTTTACCGA 
    TTTTTGTAAC TAACTTCATC TTTAAGCTCA CTGTGGTGGA TTCATTACGA 
    TTTACAGGTT ATTAACAGAG ACTGTTAAAC ACTCTCAGAG TAGCTCCGGT 
    GGATCCTCTG ATTGGTCAGA AGTTGAGGTT TGTTTTTGTG TTATCTTTCA 
    ATGGTGATTT GAATGTTTAA TGGATGATTC TTAGAATCTA AGTCAATTTA 
    G

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19381327 [Map]; Strand: c
      • AT5G47850.1 - [+] show detail - CRINKLY4 related 4
        Distance: -245; Region: promoter
      • AT5G47860.1 - [+] show detail - Protein of unknown function (DUF1350)
        Distance: -192; Region: promoter
    Flanking Genome Sequence: GT14952 - 5-prime edge 
    CCTACTTTCT CCCTGCCTAT TATTATGAAT GTTAAAAGAT CTTGGAATAT 
    ATAAACGAAC TAGTCATTCT TTATTTTGTT TCAACCAAAG AATTAAGTAT 
    AGTTTAGATA CGACGATGCC ACTGAAAGTA AGTGTTGAAT CTTTCAAAGA 
    GTTGACCATA AAAATAATTT AGAATAGAGA AAAATCACTA TGAATGAAGT 
    AAATAAGACT TAGTTTTGGT CTCTTGGGAA GGAGGTGTCT CTGTCTCATG 
    TCTCTCTAAC CGCGTTGATT TGCCGTCTTA AAAACACAAC TCCTCAAACA 
    TAAAACATTC ACACGCCATG AGAACTCTTC TTCAATGGCA CTTACCATCT 
    CAATCTCTTG TTTCTCCTCT TACTTTGTGT CTCTCCTTCT TCTTCNNNAA 
    TCTTCCTTCT CCTTTGTTTG CTTCTNCCCT CTCTACCGTC TCCATCTCCC 
    ACATCTCTAA TCAGACTCTT GTATGTGCTC TCAACAACCA CTCTTATCTT 
    CAATGTTCCA GTTTCCCTTT AAATTCGATT CGATTCTCTT TAACCAGTAA 
    CCTCCAAAAT CGAAGGTTTT CGGGGGTTGT TTCCGGAAAT GGGTTTGTGT 
    GCGGATTGAT ATCGCGGCTG GATCCCAACA CTTTCACACT TCTTTTGTGG 
    AGATTCTCTG TTGATGGAAC TAATATGTTG CACAAA

AT5G47850.1

Model type
Protein coding
Short Description
CRINKLY4 related 4
Computational Description
CRINKLY4 related 4 (CCR4); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 3 (TAIR:AT3G55950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G47860.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1350)
Computational Description
Protein of unknown function (DUF1350); LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT3G43540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR