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GT14984

CSHL Arabidopsis genetrap mutant lines

Original: GT14984

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14984

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1921516 [Map]; Strand: c
      • AT5G06290.1 - [+] show detail - 2-cysteine peroxiredoxin B
        Distance: 91; Region: intergenic
      • AT5G06300.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 228; Region: intergenic
    Flanking Genome Sequence: GT14984 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACC 
    TGGAATTAGA TAACTATCTG ATTGATTTGT TTAATAAACT TGAGTGCTCA 
    TTAAGCTAAT CTCCATCTGT AGCCGACAAC AAAATTATGT TGTGGTATTA 
    CTCGGAATAT TCTCCACTCG GAATAATTAA AAAATATCGT ACATGATAAT 
    TTTCTGGTTA AATAAAAATC TGATACCTTT GACACGAGAA AAAAGTTAAA 
    AACTAGAAGT TATGGATAAA ATCAGAAAAT AACCAAAAGA AAAGGATCGT 
    TTTGTCATTT CTTGAAAATA GCCCTATCCT TTTTTTCCAT TAAACCAAAA 
    TGTACAAAGA CAAGTGGGGA GTGATAGGGT TTGGTATATA CGCGGTTAGC 
    AGTTACCCAC ATGGTTTATC CACTTCACAC ATTTAAACCA CCCCTACAAA 
    ATAATGTTTA TCAAAACGAC CCCAATACTT TCTTTTGTCT TCTTTCCGCC 
    CTTACCTTCT GATGTTAAAC AACTTAATTT CCGCTGTACA CTGCTTTTAC 
    CAAAAAATAA ACTCCCCATA ATACATCCTT ACGTAGCGGT AGCTACCTCC 
    GAACCCGGTA CATAACTTAT CCGGTCCACT TCATCCCAAA CCAATTTTGA 
    TGTTATCTCA TCAAACTCCG GTTCATATTC CTATAACATC ATTTTTAGAG 
    TACGTACCAT CAACAAATGA ACCATGTATC GAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1921458 [Map]; Strand: c
      • AT5G06290.1 - [+] show detail - 2-cysteine peroxiredoxin B
        Distance: 33; Region: intergenic
      • AT5G06300.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 286; Region: intergenic
    Flanking Genome Sequence: GT14984 - 5-prime edge 
    CTTTCTCCCT GATTCCGGGA GCTGTGACCT CACATGATAT TTTTCTAATT 
    TATTTTTTGC AATGGTCAAA ATACTCTGCC TCTTTGCATT ATTATAAACT 
    ATTTACACAA GTGAAAGACA TAAATATTGG CAAAAGAAAA GAAGGATTTC 
    TTTATTTTTG ATTCAATTTA AGGAGAATCA CATAGCAGAA ACAGGAGAAA 
    GATGAGATAG ATACAAAGGT TCTTTGGCTA AAAATAACAA CTCTGCTCCA 
    ACTTTGAAAA GATGAATAAA ACAACTCTGA TTGCTAATTT TCACCAAACA 
    TGTGTTCAAT CTTAGCCTCT AGATAGCTGA AAAGTATTCT TTGCTGAGCT 
    TGGGGTCAGG TTTCATTGAT TTCTCCCCTG GCTTCCATCC CGCAGGGCAC 
    ACTTCATCCG GGTTTTCTTG AACATACTGT AATGCCTGCA AGACAACATC 
    ACAAGAAGCA ACAAATAACG CATCTAAACC CTAAACCTCA AAAACAAATC 
    TCTCTTTATC TATCTATCTC AATGATGTGA TTTTTCTCTT TATTACCTGG 
    AGGGTTCTCA TTGTCTCATC AACACTTCGG CCAATACCGA GGTTGTTGAT 
    GGTGGAATGC TGAATGACTC CTTCCTTGTC TATGATGAAA AGCCCTCTCA 
    GTGCAATGCC CTGTACTTAT ATATTAGCAA AATGCTTTGA TTCAAAGTGG 
    CTATACGTTA CTTGAAAGAA CACAAGTGGA TTGGACTCAA TGCAAGTATG 
    ATGCAACTAT GTCAGAAGAA ATCGTTTACC TGATCAGGGA TGAGCACTCC 
    AAACGATTTT GAAATGGATT A

AT5G06290.1

Model type
Protein coding
Short Description
2-cysteine peroxiredoxin B
Curator Summary
Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues.
Computational Description
2-cysteine peroxiredoxin B (2-Cys Prx B); FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G11630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06300.1

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Computational Description
Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 5281 Blast hits to 5279 proteins in 1570 species: Archae - 23; Bacteria - 3686; Metazoa - 10; Fungi - 132; Plants - 400; Viruses - 0; Other Eukaryotes - 1030 (source: NCBI BLink).
Link
InterPro Scan - TAIR