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GT15016

CSHL Arabidopsis genetrap mutant lines

Original: GT15016

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15016

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 298731 [Map]; Strand: c
      • AT1G01820.1 - [+] show detail - peroxin 11c
        Distance: -611; Region: promoter
      • AT1G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G01830.2 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT1G01830.3 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT15016 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGTGAAA 
    GAAGCTTCTT AGCTTTCCTC TTTCAAGCTT CTCGAGAAGC TTATCGGCGC 
    CCATTACTTC CATCTCCGAC AGCTTCTTCA GATACCCTAT TGCTCCGTAC 
    GACACCATCA TTTTCTTACT CTTCTCGCTT CCCGACATCC CCAACAGCCC 
    CGCCACGGCG TACTTCTTCG CCGTGTTTCC AGGGTTTGAA TCCAATAACA 
    TCACCAAATT CGTCAGAACG CTCTTCCCGT CTTTCTTCAT CTCACTCGAC 
    AACCNTCCTT CCGCTACCAA TCCAGCGATC GCCTGAGCCG CCGCTTCTCG 
    ACATCCGTTT GACTTCGATT CCAGAAGTTT CACGATCTCC GGGATGCAAC 
    CGGATTCTCC CACTAGCCTT TTCATCTCAC TCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 298646 [Map]; Strand: c
      • AT1G01820.1 - [+] show detail - peroxin 11c
        Distance: -526; Region: promoter
      • AT1G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon2 (3UTR)
      • AT1G01830.2 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon3 (3UTR)
      • AT1G01830.3 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: GT15016 - 5-prime edge 
    AAACGAACGA TGCGGAGACA TTGAAGCAGC CAAGATAAAA AGTGTAATAT 
    TGTCTGATGT AAGTTTATTA ACCGTTAGTT AAACTTTACT AGTAATTAAA 
    AAGTGTTCTT TGGGCTGTTT CTCTGAAGCT GATAAATATG GGCTTTATAT 
    TAAACAGGCC CATGAAGTTG AATATCTTTC AGTAGTCAAC TAGGTTTATT 
    CCCAGATAAT TTATGTGGCC AACTATTAAA TACAGGCCCA TGACCTTAAC 
    AAAAAAAAAT ACAGGCCCAT GAACGAAATA TGATTCTGTT TATCAAAATT 
    AATTAAGGAG ACAAATATCA GTTGTGAAAC TCCCAAGTTT ATTTCACAAA 
    GTCGAAATCG ATGGGCTTAA TAAAACAATT TTGCCACTAA ATAATAATTA 
    TCTCACACTA TATTTTAACT TTTTTTTTTG GGGCCTTTTG GGTGGGTGGG 
    GACCCTTTTT TTTCCCCCCC CCCCCCCCCC CCCAAAAAAA AAAACGGGGG 
    AAATTTTTTG GGGGGTTTTT T

AT1G01820.1

Model type
Protein coding
Short Description
peroxin 11c
Curator Summary
member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
Computational Description
peroxin 11c (PEX11C); CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11D (TAIR:AT2G45740.3); Has 289 Blast hits to 289 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 41; Plants - 179; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01830.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01830.2

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01830.3

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link
InterPro Scan - TAIR