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GT15031

CSHL Arabidopsis genetrap mutant lines

Original: GT15031

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15031

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17709022 [Map]; Strand: c
      • AT2G42520.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 75; Region: intergenic
      • AT2G42530.1 - [+] show detail - cold regulated 15b
        Distance: 14; Region: intergenic
    Flanking Genome Sequence: GT15031 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATAAATA 
    CTACTATGTT ACTTGTAGTC ACTAATATGT AGTTTATATT TAAATCATTT 
    GATACGTATT TAAAATGTGC TAGTGAGTAA TTAACAGCTC TTCATCTCAC 
    TCGACGAAAA AGANNTTNCN ACAAACTGAT CTTATTGTAA ACTATTGAAC 
    ATGACTACAT GAGTGGTTGA ATCAGGACTT TGTGGCATTC TTAGCCTCTT 
    CTGCTTTACC CTCTACGAAC TCAGCCGCCT TGTTTCCGGC TTCTTTTCCT 
    TTCTCAGTCA CATAATCCAA AGCTTTCTTA GCTTCCTCAG TCGCAGTTTC 
    ATTGGCTTCA ATGGTTTTCT CAACAATGTA GTCTTTTGTT TTCTCGCCAT 
    CCGCCAAGGC CTCCTTCATC TCACTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26220439 [Map]; Strand: w
      • AT5G65610.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT15031 - 3-prime edge 
    GGTAGAGTAT TTACCGACCG TTACCGACCG TTTTCATCCC TACTTCTTAT 
    CTCTGCGACA AATCAATCAT GTTTCCATGT TGCACTTTAA CATCTCTGGT 
    ACCAAATAGG CGTAATTGAA TCGAACAATG CTCTTATACT TGTGGTTAGT 
    GTTGGTTCGT CTACGTTATG CTCTCGTAAA GTTACTATAT GGGATCCTAA 
    AACAGGGAGG TCCACATAGA TTTAAAAGAA TATTTAAACA AAGTTCAGTG 
    CTAGTGATCT GTTGAATGGA CTCTTAAAAT AAACCCTCTT TTCTTGACCG 
    TTGTTTAGTT TTTAAATTGT GTTATATTTG TGAGTGTAAC GTTTGAAACA 
    ACCAACCAAC CAACCAACCA ACCAGAGGCT ATTGCAAGTT TCCAAACCAT 
    GAATCTTTTG ACGGTTTAGA AAAAGGGATT AAGGCAAAGA AATATGAGGA 
    CATCACTAAA AGACTCTCAT AGCATATCTT CCAAGAACAA GTTGTACATC 
    TTTATGCATC AGAATCTTGT CTACTTAAAA GCTTATCTGT CTCTCTTCCT 
    CCATCGCTAC GAACCTCTAT TTGATAATAA CTTAATTAAC TTGTTAATCT 
    TGCCATTAAC CACAAAATCA TTAACCTTGT CTCTTTCCAT CTCCCTCAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26220502 [Map]; Strand: w
      • AT5G65610.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT15031 - 5-prime edge 
    CTTTCTCCCT GCTAAGAAGG TCTAAACAAA TGCTAAAAGA AAACGAAACC 
    AACAAAACTG TAGAGTGTAG AAAAAAACAT AGGGTACACA TGTTATAAAC 
    CAAAACTATT GGGGTATATA CTTAAATAAA TAAAAGTACA CGATAGGGAA 
    CATTTGTAAT ACACAGAACT TAGGGGTGCA TACAAAAATA AAATTGAAAA 
    AACAGAGCAT AGATCAGTGA TCCGGACTCT GTTTTGGAAG ATCTCTAAAA 
    AGCTTAGGAT CATCATCGGC ATCGCGCAGA TAGAAACCAT CATCGAAATT 
    CTGCGAATAG CTCACAGCAT CGTAGTGAAA CGTAACTAAC GTTTTCGATT 
    TATTATTCTC CAATCCGCAA CTTCTAACCA ATAATAATCT TCTCATCAAA 
    TCCCTTAACT TCGGACTAGG TCTTGTCTTG TTGTTGTGGT TACTGATTCG 
    AGGGTACTCT GTTTCTTCTG TATGGATGAG ACAAGATAAC GGCGAACTCA 
    AGCATCGACC GGTGGAGTAC GATTGTCTAC GGTTGTCGGC GAGAACTCTA 
    TCCATTTCTT GCAAAAATAA AAGAGAGATT GTTTTATTGA TTGAGTGAGA 
    AATATGGGGT TTATAATCGA CGAAAGAGTT AGAGCTAACA ATAAATGAAT 
    TACCAAGCAA AGTTGGAAAA TAATGTAGAT TTTGGCTGGT TATGGTTCAG 
    CGGTCCAATC ATAATTCTCG TTTTTTCTTT GGCAGCTCAT AATTTCTCAT 
    TTATGGGAAG CATTCATTTA TTGAAACTTG GA

AT2G42520.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 140248 Blast hits to 67514 proteins in 3679 species: Archae - 1004; Bacteria - 58923; Metazoa - 37605; Fungi - 9665; Plants - 13202; Viruses - 1099; Other Eukaryotes - 18750 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42530.1

Model type
Protein coding
Short Description
cold regulated 15b
Computational Description
cold regulated 15b (COR15B); INVOLVED IN: response to cold, defense response to fungus; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold-regulated 15a (TAIR:AT2G42540.2); Has 194 Blast hits to 148 proteins in 43 species: Archae - 0; Bacteria - 18; Metazoa - 5; Fungi - 6; Plants - 155; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65610.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR