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GT15034

CSHL Arabidopsis genetrap mutant lines

Original: GT15034

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15034

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 210730 [Map]; Strand: w
    Flanking Genome Sequence: GT15034 - 5-prime edge 
    CATAATTAGG GAAGAACGAT AGATGGAGGA CGAGGAAGAG AAGAAAGCCG 
    GAGGAAAATC ATCAGTTTCA CCCGAGAGAA GCAGAGCTGC TGCTATTCTT 
    AACCAATCCG AACGTGTGAT GATTCACTCC ACCTTTATTT TATGTTTCAA 
    AAAAAGTTTC TGGGCACTCG ACAAGAATTG ATTGTAATTC TAATATTCTT 
    TTGAAGAAAA ATATTCATTG AGGAATGAGG TTCGTCATAA TCAATTATGA 
    ATATAGAATT GGCTGGTTCA ACGATCAAAA ATGGATAATC CGGACAATAT 
    AACAAAAATG ATGACGTTAA GCAAAACATA CAGTAATTTT ATATAAAAAA 
    ATCATAACTG TTTGAGTAAT CTTTGTGACG TTACAAAATA CTAATTTTAA 
    TTTTTTTGAT AGTATGACTA ATCTGTGTTA TATTAAGGTT TTACCTCCCC 
    GCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18546 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15034 - 5-prime edge 
    TTCATCCTAC TTTCTCCCTG CTGCCACAGC CGCCCACAGG CAAGTCATCA 
    TATATATTAA CTTGTTCTAG TTAATGATGT CTCTAGCTTT ATAAGTAAAT 
    GATAATAATT AAGGAAAAAC GATAGATGGA GGACGAAGAA GAGAAGAAAG 
    CCGGAGGAAA ATCATCAGTT TCAACCAAGA GAAGCAGAGC TGCTGCTATT 
    CATAACCAAT CCGAACGTGT AATGATTCAC TCAACCATTA TTTTATTTTT 
    CAAAAAAAGT TTCATCTCAC TCGA

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01540
Link
InterPro Scan - TAIR