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Mutant Lines
GT15058

GT15058

CSHL Arabidopsis genetrap mutant lines

Original: GT15058

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15058

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 18359622 [Map]; Strand: c
- AT5G45307.1 - [+] show detail - MIR168/MIR168B; miRNA
  Distance: -729; Region: promoter
- AT5G45310.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflore...
  Distance: 0; Region: exon4 (CDS)

AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
GTGAAGAGTG CTCCTATAAG TGGAGTACAC AGCTCTTGTT CTTTGGCTTC 
ATACATTACT ATACCCACCA CTAGAGCGAG CATCGCGCTG AATACGCTTC 
TTGAAACCGC AATGTTCTTC TCTAAACCGA GGACTCTTGG CGTCAATTCT 
TCGTCTTTTG GAATTGTCGA TTTCGCAAAC GGGTAAAGAG GTGATTTAAC 
CGATGTAAAC TCGGCTTTTC CCTTTGATGC ATAAGGGATA TTCTTAGGCT 
TATGTATGCT ACGGATTTCG CTTGGTTCTT CACTTGGTTT AACTTTGCCC 
TTCTTGCTCC TATAGACTTT TCCATTAACT TCCATCAGTT GAAGATGTTC 
CTCCTTTAGT TCTTGTAGCT GCCAAAATCC AAATGTTTAG AA

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 24894075 [Map]; Strand: w
  - AT5G61980.1 - [+] show detail - ARF-GAP domain 1
    Distance: -397; Region: promoter
Flanking Genome Sequence: GT15058 - 3-prime edge
```
TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACATGCG TGGCATCTCA 
TTTTTTTTCT AAAAAATTAA TTAAACTATC CCAAACAAAA ATTAACTTTT 
AAATTTAAAT TACCTTAAAT TAATCATATA TAAATAAGCT TACCCCACCA 
CTTTCTTCTT CTTGG
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 24894162 [Map]; Strand: w
- AT5G61980.1 - [+] show detail - ARF-GAP domain 1
  Distance: -310; Region: promoter

ATGGAAGGTT TCAAGGTTTT CATCGCACTC GACCACCACA ACAAGGACAA 
GGACAAAGAG AAGTAGTAGA AAGTGTATTT TTGGATGATT GTCTCCATCG 
CACGATCTTT TTCCTGAATT TCCGCCCATT TTTCCCCACT TCTCAACCAA 
CCCTAATCCC CAAATTAAGC TTTTTCATTT TCCAAAAAAG ACAACAAAAA 
CTTTTATACT TTTTTTTTT

AT5G45307.1

Model type: miRNA
Short Description: MIR168/MIR168B; miRNA
Curator Summary: Encodes a microRNA that targets AGO1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGCUUGGUGCAGGUCGGGAA
Link: InterPro Scan - TAIR

AT5G45310.1

Model type: Protein coding
Computational Description: unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G61980.1

Model type: Protein coding
Short Description: ARF-GAP domain 1
Curator Summary: A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD1 belongs to the class 1, together with AGD2, AGD3 and AGD4. Not expressed in hypocotyls and cotyledons.
Computational Description: ARF-GAP domain 1 (AGD1); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: endocytic vesicle; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), Ankyrin repeat-containing domain (InterPro:IPR020683), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ARF GTPase-activating protein (TAIR:AT5G13300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR