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GT15063

CSHL Arabidopsis genetrap mutant lines

Original: GT15063

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15063

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22540389 [Map]; Strand: c
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -930; Region: promoter
    Flanking Genome Sequence: GT15063 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTTCTG ATATCGCATT 
    CCCTTTAGTG TAGAAATCTT CTTTAGCCTT TTCTTACATT TTTTTGTTGC 
    AATAATGTCA ACTACCTCAT TCTCATTTAA CGACTTTCCT CCCTCAGTTA 
    ATTGCTTCTA TTCCTAAACG ATATTCAGAA AGAAAAATAA TTTCAACCGA 
    TGAACCTTCC AAAATCTGTA CCGAGAAGAT AAAATTAAAT TCAACTAAAG 
    CCGTAAAAAT ACTAAGATTG TAGGAAAGTG AATACGAAGA ACTGAAAAAA 
    GTTTTTAAAA TAACTGAAAT TGATTAGTAA ATACACTACA AGACTGAAAT 
    CATGTATATT TTATTCCAAA ATAGAATTTG TTTTTAATAA ATACCCGGTC 
    AGTTCAACTG TTTCACTAGA TTGCGAGTTA ATAGTTTTTA TGAGATTTAA 
    TGGTTTTAAA ATTGGCGGAT ATTAGCACTA AACCCATACC GGATAAGTGT 
    CTAGATCATA GATTAGCCAG A

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18359623 [Map]; Strand: c
      • AT5G45307.1 - [+] show detail - MIR168/MIR168B; miRNA
        Distance: -730; Region: promoter
      • AT5G45310.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflore...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15063 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTG 
    TGAAGAGTGC TCCTATAAGT GGAGTACACA GCTCTTGTTC TTTGGCTTCA 
    TACATTACTA TACCCACCAC TAGAGCGAGC ATCGCGCTGA ATACGCTTCT 
    TGAAACCGCA ATGTTCTTCT CTAAACCGAG GACTCTTGGC GTCAATTCTT 
    CGTCTTTTGG AATTGTCGAT TTCGCAAACG GGTAAAGAGG TGATTTAACC 
    GATGTAAACT CGGCTTTTCC CTTTGATGCA TAAGGGATAT TCTTAGGCTT 
    ATGTATGCTA CGGATTTCGC TTGGTTCTTC ACTTGGTTTA ACTTTGCCCT 
    TCTTGCTCCT ATAGTCTTTT CCATTAACTT CCATCAGTTG AAGATTTTCC 
    TCCTTTAGTT CTTGTAGCTG CCAAAATCCA AATGTTTAGA ACATATGTAT 
    ATGTGGTTAT GCAACATGTC TACTAAACCA GTTTTTGTAC CTCGGCCTCT 
    AGCTTTTCTA TTTTGGAAAT GGCTTCATCA TGTTCATCTT CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22540318 [Map]; Strand: c
      • AT3G60960.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 1683; Region: intergenic
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -1001; Region: intergenic
    Flanking Genome Sequence: GT15063 - 5-prime edge 
    CTTTCTCCCT GATCAGAAGT GCAAGACATT ATATACATGA TCTTACATGC 
    TCTAATACTT TTAAAGAAAG AGAAGATTTT CACTACGAAG CAAAACATAG 
    ATCATTATGA TAGTATCTCC AGCTTGAATG CTTTGAGATC ACAAAAGTTT 
    TAGATGTAGT ATAAGATTAA TGCATATTTA AGACAAAACA AATAATACTA 
    AAATCATATT TTACTAAATT TATATATATA TATATATATA TTGATAAGTT 
    TATGCAATTA TTAGTATATG ATAATGATGT GATCAGATAG TTACATTTGA 
    TTTTCACACA AATCATTATA TTATCGAATT ATGTTAAATA TTATATTGCC 
    TCGACTAAAG ACCAAAAACT TTTATTAGTT ATAGAGATTA TTAATCTCTC 
    GAGTATTACA TTATAGAAGT TTTTCTATAC AAACTCTTCA CAAATTAAAC 
    TTGAATTTAC AATTGTGGTC ACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22540318 [Map]; Strand: c
      • AT3G60960.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 1683; Region: intergenic
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -1001; Region: intergenic
    Flanking Genome Sequence: GT15063 - 5-prime edge 
    CTTTCTCCCT GATCAGAAGT GCAAGACATT ATATACATGA TCTTACATGC 
    TCTAATACTT TTAAAGAAAG AGAAGATTTT CACTACGAAG CAAAACATAG 
    ATCATTATGA TAGTATCTCC AGCTTGAATG CTTTGAGATC ACAAAAGTTT 
    TAGATGTAGT ATAAGATTAA TGCATATTTA AGACAAAACA AATAATACTA 
    AAATCATATT TTACTAAATT TATATATATA TATATATATA TTGATAAGTT 
    TATGCAATTA TTAGTATATG ATAATGATGT GATCAGATAG TTACATTTGA 
    TTTTCAAACA AATCATTATA TTATCGAATT ATGTTAAATA TTATATTGCC 
    TCGACTAAAG ACCAAAAACT TTTATTAGTT ATAGTGATTA TTAATTTCTC 
    GAGTATTACA TTATAGAAGT TTTTCTATAC AAACTCTTCA CAAATTAAAC 
    TTGAATTTAC AATT

AT3G60960.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 6360 Blast hits to 3266 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 6335; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60961.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45307.1

Model type
miRNA
Short Description
MIR168/MIR168B; miRNA
Curator Summary
Encodes a microRNA that targets AGO1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGCUUGGUGCAGGUCGGGAA
Link
InterPro Scan - TAIR

AT5G45310.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR