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GT15072

CSHL Arabidopsis genetrap mutant lines

Original: GT15072

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15072

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14782428 [Map]; Strand: c
      • AT4G30190.2 - [+] show detail - H(+)-ATPase 2
        Distance: -6370; Region: intergenic
      • AT4G30200.1 - [+] show detail - vernalization5/VIN3-like
        Distance: 4205; Region: intergenic
    Flanking Genome Sequence: GT15072 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATTC 
    ATATGGCTCT AGATTTTATC ATTTGATAAT GATTCCAAAT CAATTTCTTA 
    AGAAATATAA TTGTCCGTAC TTATCTTTCT AAACTAACGA TCACTGGTTG 
    ATTAAATTAA TAGTAGTAAC TAAAAATAAT TCAATAGCTT TCAAAGTTGT 
    ATCATCTTAA TGGGATCTTT AATAATTGCA TTGTAAAATA ATACACCGTC 
    ACAAGGATAA CGAGTTTCCT CGTGCCGTGT CTCCCGCAGC AAGTTGCATT 
    TCATCTTCAC TCGACCAAAT TTNCTTATGA TGTTGGAAAG GAACCTAAAA 
    CTTATTACTG ATATTATCGA TTATCAATCA ATACAGAAAA TTATAAACAA 
    AAATTATAGT GTCCTAATCT ACACAATCTC ATTCGCTATC ACATAATAAA 
    GTGTTACATT ATTAAAAAAT CCCCCCTTCC CCCCCCCCCC CAAAAAAAAA

AT4G30190.2

Model type
Protein coding
Short Description
H(+)-ATPase 2
Curator Summary
belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom
Computational Description
H(+)-ATPase 2 (HA2); FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 1 (TAIR:AT2G18960.1).
Link
InterPro Scan - TAIR

AT4G30200.1

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR