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GT15079

CSHL Arabidopsis genetrap mutant lines

Original: GT15079

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15079

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16184329 [Map]; Strand: w
      • AT3G44605.1 - [+] show detail - transposable element gene
        Distance: 3874; Region: intergenic
      • AT3G44610.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 3800; Region: intergenic
    Flanking Genome Sequence: GT15079 - 3-prime edge 
    AATGAAACGG TAGAGGATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAGCGTTGAT TAGTTAGAGA AACCTAAATT TTCTAAAGGT AAATGTGAGT 
    TACTGAGTGT ATATGATCAC ACAGTTAATC AATATGATTT TCATGAGGTT 
    ATCATACAAA AGTGAAAAGA CTCAAGGTGG AATCTTCTCA TACGCATCGT 
    TCTTCATACT TACATATTGG TTACTTGTTA TCTAAAATCT ATCCAAATTA 
    ATCCAAATTA CTCAAGAATA TCAAATATAT TCGAATTCAT AATTGTAATT 
    TTGGATATTT GGATTATTAA AAGTATAAAT TAACTAATCT TTTTAGTTAT 
    ATACTAGTAT TTTGGATACT TTCGAGTACA CGTTGGATGT ATTGGATTTG 
    GTTCGATTTT TTCGGANAAG AAGGTGTAGG ACCATGATGA TATTTAAGCC 
    GATTCCAGTC CGTTTTCATT TGGTTAATTT ATCCATACCC AGTTTCATCG 
    GATATGTGAT TGATGAATCC GTCTACTGGA TTAGTCATCT TTTTACGTCC 
    AATAATCTTT TGTACATTTT GTTGTAATTT CAAATCCGTT TTCTCTTTTT 
    TTTTTACTTT AAAAATCCTA AAAA

AT3G44605.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.1e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT3G44610.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 2 (TAIR:AT5G47750.1); Has 99456 Blast hits to 74546 proteins in 2417 species: Archae - 35; Bacteria - 11117; Metazoa - 41933; Fungi - 12113; Plants - 14694; Viruses - 280; Other Eukaryotes - 19284 (source: NCBI BLink).
Link
InterPro Scan - TAIR