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GT15080

CSHL Arabidopsis genetrap mutant lines

Original: GT15080

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15080

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18359627 [Map]; Strand: c
      • AT5G45307.1 - [+] show detail - MIR168/MIR168B; miRNA
        Distance: -734; Region: promoter
      • AT5G45310.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflore...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15080 - 3-prime edge 
    GGTAGAGGAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTGTGAA 
    GAGCGGTCCT ATAAGTGGAG AACACAGCTC TTGATCTTTG GCTTCATACA 
    TTACTATACC CACCACTAGA GCGAGCATCG CGCTGAATAC GCTTCTTGAA 
    ACCGCAATGT TCTTCTCTAA ACCGAGGACT CTTGGAGTCA ATTCATCGTC 
    TTTTGGAATT GTCGATTTCG CAGACGGGTA AAGAGGTGAT TTAACCGATG 
    TAAACTCGGC TTTTCCCTTT GAGGCATAAG GGATATTCTT AGGCTTATGT 
    ATGCTACGGA TTTCGCTTGG ATCTTCACTT GGATAAACTT TGCCCTTCTG 
    GCTCCGAGAG ACTTTTCCAT TAACTTCCAT CAGGTGAAGA TTTTCCTCCT 
    TTAGTTCTTG TAGCTGCCAA AATCCAAATG TTTAGAACAT ATGTATATGT 
    GGGTATGCAA CATGTCTACT AAACCAGTTT TTGTACCTCG G

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18359623 [Map]; Strand: c
      • AT5G45307.1 - [+] show detail - MIR168/MIR168B; miRNA
        Distance: -730; Region: promoter
      • AT5G45310.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflore...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15080 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTG 
    GGAAGAGCGC TCCTATAAGT GGAGAACACA GCTCTGGATC TGAGGGGTCT 
    TACATTACTA TACCCACCAC TAGAGCGAGC ATCGCGCTGA ATACACTTCT 
    TGAAACCCCA ATGTTCTTCT CTAAACCGAG GACTCTTGGC GTCAATTCAT 
    CGTCTTTTGG AATTGGCGAT TTCGCCGACG GGTAAAGAGG TGATTTAACC 
    GATGTAAACT CGGCTTTTCC CTTTGAGGCA TAAGGGATAT ACTAAGGCTT 
    ATGTATGCTA CGGATTACGC TTGGATCCTC ACTTGGAAAA ACTTAGCCCT 
    TCTGGCTCCG AGAGACTGTT CCACTAACTT CCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 422921 [Map]; Strand: c
      • AT2G01913.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -295; Region: promoter
    Flanking Genome Sequence: GT15080 - 5-prime edge 
    CCTGCCACAT GCTGTTGGTT ATATAGGGGT TGTAATGTGA TATGTTTTGT 
    AACTTTTTAT ACACTCCATT AACACAATGC ATGTTTTGAA GTTTGGCACC 
    GAGTGCTAAT ATAAAAAAAA AAAAAAACAT TTTCCAAAAG TTTTGTTCCC 
    CCTTCCCCCT TTTAAAGGAT TTAAAAAGGG CCCTAAAAAA AAAAAAAAAA 
    AATGGGGGAG GGTAAGGGAA TTTTTTTCGC CCCCCCATTT TTTTTCCCGG 
    GGGGGTAAAA AACCCCCCTT TTTATGGCAA AAACAAATTT TGGTTAATTA 
    ATTTTTCCCC CCTCCCTTTT CCTTTTTTTT TTACCCCTTT TAAACACAAA 
    AATTTTTCCC AATTTCAATT TCAATTCCCC CCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 422932 [Map]; Strand: c
      • AT2G01913.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -306; Region: promoter
    Flanking Genome Sequence: GT15080 - 5-prime edge 
    CCTACTTTCT CCCTGCCAAC TGCTGTTGGT TATATAGGGG TTGTAATGTG 
    ATATGTTTTG TAACTTTTTA TACACTCCAT TAACACAATG CATGTTTTGA 
    AGTTTGGCAC CGAGTGCTAA TATAAAAAAA AAAAAAAACA TTCTCAAAAA 
    GTTTGGTCCC CCCTCCCCCC TTTTAAAGGA TTGAAAAGGG GCCCGAAAAA 
    AAAAAAAAAA AATTGGGGGA GGGTAAGGGA ATTTTTTTCG CCCCCCCTTT 
    TTTTTCCCGG GGGGGGTAAA AAACCCCCCT TTTTTTGGCA AAACCCAATT 
    TTGGTTATTT TTTTTTTCCC CCCCCCCCTT CCCCTTTTTT TTTCCCCCTT 
    TAAACCCCAA AAATTTTTCC CAATTCCAAT TCCAATTCCC CCCCCCCC

AT2G01913.1

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45307.1

Model type
miRNA
Short Description
MIR168/MIR168B; miRNA
Curator Summary
Encodes a microRNA that targets AGO1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGCUUGGUGCAGGUCGGGAA
Link
InterPro Scan - TAIR

AT5G45310.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR