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GT15081

CSHL Arabidopsis genetrap mutant lines

Original: GT15081

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15081

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18359623 [Map]; Strand: c
      • AT5G45307.1 - [+] show detail - MIR168/MIR168B; miRNA
        Distance: -730; Region: promoter
      • AT5G45310.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflore...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15081 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTG 
    TGAAGAGTGC TCCTATAAGT GGAGTACACA GCTCTTGTTC TTTGGCTTCA 
    TACATTACTA TACCCACCAC TAGAGCGAGC ATCGCGCTGA ATACGCTTCT 
    TGAAACCGCA ATGTTCTTCT CTAAACCGAG GACTCTTGGC GTCAATTCTT 
    CGTCTTTTGG AATTGTCGAT TTCGCAAACG GGTAAAGAGG TGATTTAACC 
    GATGTAAACT CGGCTTTTCC CTTTGATGCA TAAGGGATAT TCTTAGGCTT 
    ATGTATGCTA CGGATTTCGC TTGGTTCTTC ACTTGGTTTA ACTTTGCCCT 
    TCTTGCTCCT ATAGTCTTTT CCATTAACTT CCATCAGTTG AAGATTTTCC 
    TCCTTTAGTT CTTGTAGCTG CCAAAATCCA AATGTTTAGA ACATATGTAT 
    ATGTGGTTAT GCAACATGTC TACTAAACCA GTTTTTGTAC CTCGGCCTCT 
    AGCTTTTCTA TTTTGGAAAT GGCTTCATCA TGTCATCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18359625 [Map]; Strand: c
      • AT5G45307.1 - [+] show detail - MIR168/MIR168B; miRNA
        Distance: -732; Region: promoter
      • AT5G45310.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflore...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15081 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTGTG 
    AAGAGTGCTC CTATAAGTGG AGTACACAGC TCTTGTTCTT TGGCTTCATA 
    CATTACTATA CCCACCACTA GAGCGAGCAT CGCGCTGAAT ACGCTTCTTG 
    AAACCGCAAT GTTCTTCTCT AAACCGAGGA CTCTTGGCGT CAATTCTTCG 
    TCTTTTGGAA TTGTCGATTT CGCAAACGGG TAAAGAGGTG ATTTAACCGA 
    TGTAAACTCG GCTTTTCCCT TTGATGCATA AGGGATATTC TTAGGCTTAT 
    GTATGCTACG GATTTCGCTT GGTTCTTCAC TTGGTTTAAC TTTGCCCTTC 
    TTGCTCCTAT AGTCTTTTCC ATTAACTTCC ATCAGTTGAA GATTTTCCTC 
    CTTTAGTTCT TGTAGCTGCC AAAATCCAAA TGTTTAGAAC ATATGTATAT 
    GTGGTTATGC AACATGTCTA CTAAACCAGT TTTTGTACCT CGGCCTCTAG 
    CTTTTCTATT TTGGAAATGG CTTCTCATGT CCATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18355866 [Map]; Strand: w
      • AT5G45300.2 - [+] show detail - beta-amylase 2
        Distance: 0; Region: exon7 (CDS)
      • AT5G45300.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: GT15081 - 5-prime edge 
    TGGTTGGTAT CTCTTCCAAA GTGTGGTTCT ATTTTTCTCT ACCGTTAAGA 
    TCAACCGGCT TTAGATGCAG TTGCTATTAT GGCCGCTTCA TCTTAAATTG 
    GCACTCACAA TTGCTAATTG GTCATGCTGA

AT5G45300.1

Model type
Protein coding
Short Description
beta-amylase 2
Computational Description
beta-amylase 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 1218 Blast hits to 1198 proteins in 187 species: Archae - 0; Bacteria - 92; Metazoa - 210; Fungi - 10; Plants - 824; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45300.2

Model type
Protein coding
Short Description
beta-amylase 2
Computational Description
beta-amylase 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 1274 Blast hits to 1254 proteins in 201 species: Archae - 0; Bacteria - 92; Metazoa - 229; Fungi - 10; Plants - 856; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45307.1

Model type
miRNA
Short Description
MIR168/MIR168B; miRNA
Curator Summary
Encodes a microRNA that targets AGO1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGCUUGGUGCAGGUCGGGAA
Link
InterPro Scan - TAIR

AT5G45310.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR