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GT15092

CSHL Arabidopsis genetrap mutant lines

Original: GT15092

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15092

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16838871 [Map]; Strand: w
      • AT4G35440.1 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35440.2 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35450.5 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -661; Region: promoter
      • AT4G35450.1 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -674; Region: promoter
      • AT4G35450.3 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -798; Region: promoter
      • AT4G35450.2 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -816; Region: promoter
    Flanking Genome Sequence: GT15092 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTG 
    ATTCTAGTCT CGATCGCGTA AAGGCAGTGT TGCGTCCTTT CCTTAAGACT 
    GTTGCCGCAT GTGTGACGCT TGGGACTGGA AATTCGCTGG GGCCGGAAGG 
    TCCAAGTGTT GAAATTGGAG CGTCAATCGC TAAAGGTGTG AATTCTCTGT 
    TCAATAAAAG TCCTCAGACT GGCTTCTCAC TTCTTGCCGC TGGCTCAGCT 
    GCTGGCATTT CCTCTGGTTT GTTCATCTGA TATTTGCTAA TGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16838871 [Map]; Strand: w
      • AT4G35440.1 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35440.2 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35450.5 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -661; Region: promoter
      • AT4G35450.1 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -674; Region: promoter
      • AT4G35450.3 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -798; Region: promoter
      • AT4G35450.2 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -816; Region: promoter
    Flanking Genome Sequence: GT15092 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTG 
    ATTCTAGTCT CGATCGCGTA AAGGCAGTGT TGCGTCCTTT CCTTAAGACT 
    GTTGCCGCAT GTGTGACGCT TGGGACTGGA AATTCGCTGG GGCCGGAAGG 
    TCCAAGTGTT GAAATTGGAG CGTCAATCGC TAAAGGTGTG AATTCTCTGT 
    TCAATAAAAG TCCTCAGACT GGCTTCTCAC TTCTTGCCGC TGGCTCAGCT 
    GCTGGCATTT CCTCTGGTTT GTTCATCTGA TATTTGCTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16838923 [Map]; Strand: w
      • AT4G35440.1 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35440.2 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35450.5 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -609; Region: promoter
      • AT4G35450.1 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -622; Region: promoter
      • AT4G35450.3 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -746; Region: promoter
      • AT4G35450.2 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -764; Region: promoter
    Flanking Genome Sequence: GT15092 - 5-prime edge 
    CTACTTTCTC CCTGGCTAGA ATCAGAATCT CCAGTAGATT TTCCAGCAGA 
    TTCTCGAAGC TGATTGAGGA TGCTCACCAC CAAACCGCCG ATAGTCGGAA 
    CAAGGATAAC ACGCAACCAA TTGGAACCGA TCGGTGCCTC TCTAAGCCAC 
    GAAGCTCCAC GATCAGGAAT CCCATCCCAG GAAAAGTCTC GAAGCAAGTG 
    AACACAGTTG TTGAATAGAA CCACACTAAC TCCAGTGAGA ACACCAACCA 
    AACAAGCCGA CGCTATCGCA AGCTCCTGAG ACGGCTGCTG ATCAAATCCA 
    ACCTCATCCT GATCAGTCTC CTGCTTCGCC GCCGGTAAAC GCGGGAAAAT 
    TCTACCGCCA ATAGCGACGG AACCGAAAAA CGGTGAAAGG ACGACATTGA 
    ACTGAAAAGG AACGTCGGTT TTGTGAATTG GAGCGAATCT CCGGGAAGAG 
    ACGGGAGATC GGAGGGCAGC ACAGAGTGGA AGCGTGGCTG CCATGAACGG 
    CTGCTTCCGT GAAGTGACGC GTGTTTATCC ATTAACGGAT AATTGATCTT 
    AAATCACAAA TCTTACGTGG CTGATCTTAT TATTCAAACG CATGGGCTTG 
    GGCCTTGAGG TAAACAGGTT TATATGGGCC AATAACAATA AATTTGATTA 
    AAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16838924 [Map]; Strand: w
      • AT4G35440.1 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35440.2 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35450.5 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -608; Region: promoter
      • AT4G35450.1 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -621; Region: promoter
      • AT4G35450.3 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -745; Region: promoter
      • AT4G35450.2 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -763; Region: promoter
    Flanking Genome Sequence: GT15092 - 5-prime edge 
    CTACTTTCTC CCTGGCTAGA ATAGAATCTC CAGTAGATTT TCCAGCAGAT 
    TCTCGAAGCT GATTGAGGAT GCTCACCACC AAACCGCCGA TAGTCGGAAC 
    AAGGATAACA CGCAACCAAT TGGAACCGAT CGGTGCCTCT CTAAGCCACG 
    AAGCTCCACG ATCAGGAATC CCATCCCAGG AAAAGTCTCG AAGCAAGTGA 
    ACACAGTTGT TGAATAGAAC CACACTAACT CCAGTGAGAA CACCAACCAA 
    ACAAGCCGAC GCTATCGCAA GCTCCTGAGA CGGCTGCTGA TCAAATCCAA 
    CCTCATCCTG ATCAGTCTCC TGCTTCGCCG CCGGTAAACG CGGGAAAATT 
    CTACCGCCAA TAGCGACGGA ACCGAAAAAC GGTGAAAGGA CGACATTGAA 
    CTGAAAAGGA ACGTCGGTTT TGTGAATTGG AGCGAATCTC CGGGAAGAGA 
    CGGGAGATCG GAGGGCAGCA CAGAGTGGAA GCGTGGCTGC CATGAACGGC 
    TGCTTCCGTG AAGTGACGCG TGTTTATCCA TTAACGGATA ATTGATCTTA 
    AATCACAAAT CTTACGTGGC TGATCTTATT ATTCAAACGC ATGGGCTTGG 
    GCCTTGAGGT AAACAGGTTT ATATGGGCCA ATAACAATAA ATTTGATTAA 
    AATAAAAGGC CTCTTAGCTT TAGGGTCAAA CTTCAATGGA GAAGCAGTGG 
    CTGTTGTCC

AT4G35440.1

Model type
Protein coding
Short Description
chloride channel E
Curator Summary
Enclodes a choride channel protein that is localized to the thlakoid membrane.
Computational Description
chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35440.2

Model type
Protein coding
Short Description
chloride channel E
Curator Summary
Enclodes a choride channel protein that is localized to the thlakoid membrane.
Computational Description
chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2).
Link
InterPro Scan - TAIR

AT4G35450.1

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.2

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.3

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.5

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1).
Link
InterPro Scan - TAIR