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GT15098

CSHL Arabidopsis genetrap mutant lines

Original: GT15098

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15098

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10861093 [Map]; Strand: c
      • AT5G28830.1 - [+] show detail - calcium-binding EF hand family protein
        Distance: 2425; Region: intergenic
      • AT5G28840.1 - [+] show detail - GDP-D-mannose 3',5'-epimerase
        Distance: 1080; Region: intergenic
    Flanking Genome Sequence: GT15098 - 3-prime edge 
    GGTAGAGTAT TTTACTGACC GTTACCGACC GTTTTCGGTT AACGAGTTAC 
    TAAACTAATA ATTAATTTCA TCTCAAAGAA CTTCAAAAGA AAAGACTTCA 
    CGTAGTTCAT CTCTCTCGAC AATATTCTTC TTATTGATCA AAAACATGTG 
    TACAAAGTAT ATATAGAGAG GAGATTGTCG AGATAAACCT AACCGACTAT 
    ACATGTTAAT ATACAAACTC ACAAAGCCCA TATAATCTAA CTTAGCCCAA 
    TAAAGGAGAG TAAAGTGAGG TGTAGGTGTT GGTGGAAACT AATTCATCTC 
    TAAAAATCTG GAGAAATCGG ACAAAGATGA TGAACTTGAT GATCAATATA 
    GTTTAGGCTT TTAGGGAAGT GTGAAGATGA ACTTGATGAT CAAATTTTAG 
    TTAACCCAAG TTAAATTTGG GTTGAGTTAA ATGCTTCATT TGCTTTTGCA 
    TATGATATAA AAGGTGATTT GGGGTCATTT TAGAAGCGAC TCGAAGAAGA 
    GTGAGAGCGA GAGCAAAACC CCAACAAAAA ATTGGGTGAT TGTTGAGTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10861003 [Map]; Strand: c
      • AT5G28830.1 - [+] show detail - calcium-binding EF hand family protein
        Distance: 2335; Region: intergenic
      • AT5G28840.1 - [+] show detail - GDP-D-mannose 3',5'-epimerase
        Distance: 1170; Region: intergenic
    Flanking Genome Sequence: GT15098 - 5-prime edge 
    TTCCTCCTAG GTTAGCCCAC ACTTGCCCGA GCACTTATTG TGCATCCACT 
    ACCTAATCAG TTTATGTTGA ATCACACCAA CGGACCTAAC TTTCTCATTT 
    TGGCAAGCCG CACAAACAAT GGAAAACATA TATTAAATTA ATCTCTCAAT 
    ATTCTTTAAA ACAAAAAAAA ATGAATTCAA CAACCCCCCA AAAATGAAGG 
    GAAAAACTTT CT

AT5G28830.1

Model type
Protein coding
Short Description
calcium-binding EF hand family protein
Computational Description
calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G38810.2); Has 259 Blast hits to 210 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28840.1

Model type
Protein coding
Short Description
GDP-D-mannose 3',5'-epimerase
Curator Summary
Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.
Computational Description
"GDP-D-mannose 3',5'-epimerase" (GME); FUNCTIONS IN: NAD or NADH binding, GDP-mannose 3,5-epimerase activity, catalytic activity; INVOLVED IN: L-ascorbic acid biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 30173 Blast hits to 30172 proteins in 2803 species: Archae - 688; Bacteria - 17773; Metazoa - 351; Fungi - 177; Plants - 999; Viruses - 17; Other Eukaryotes - 10168 (source: NCBI BLink).
Link
InterPro Scan - TAIR