1. Home
  2. Mutant Lines
  3. GT15104

GT15104

CSHL Arabidopsis genetrap mutant lines

Original: GT15104

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15104

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13403532 [Map]; Strand: w
      • AT2G31450.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G31450.2 - [+] show detail - DNA glycosylase superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15104 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AGCCATTTGT TCCATGACCA TATATGACCT TGTGTTAGTA TTTTACTATT 
    TAGAGTCTTA TGTGTTGCTT AATGTAATGT CTTCCATCTT TTCATGTCTA 
    ATGATGCATC AGCTGTGTGG TTTACCCGAT ATAGAAGATT TTGCTTACAA 
    AAAGACTATT GGATCTCCTT CATCTAGTAA GTCTCCTTTT ATAAACTCAC 
    AACTTTCACA TTCCCAACCA TTCATTAAAC TTAATATCAA TCACCAGGTT 
    GAAAAAATAG CCAAAGAACC TGACTACTTT CTAAACTAGT TGCATGATAT 
    GTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5713958 [Map]; Strand: w
      • AT1G16710.2 - [+] show detail - histone acetyltransferase of the CBP family 12
        Distance: -261; Region: promoter
      • AT1G16710.1 - [+] show detail - histone acetyltransferase of the CBP family 12
        Distance: -331; Region: promoter
    Flanking Genome Sequence: GT15104 - 5-prime edge 
    TCCTACTTTC TCCCTGCCCC CAATTAACTT TGACAGAGGT TCCTTGATGA 
    TTCGTATTCA GACATAAGTA ACATAAGGTA AGTGTTATTT AATGTGTCTT 
    TTGTTACTTA CAAAATCAAA ACCAAAAATC CCTAAATAGC CAAAAAAAAA 
    AAAATCAAAT TCCCCAAATC AAAAAATCCA AATTTCTTGG ATTCGAAAAA 
    AATTGGCCAA TATTCCAATT CCCCCGCCTC CAGGGTTTGG GGGGAACCCC 
    GTTCGGGGAT TTACCACCGA CCTGGGGTTG AACCCTATTT TTAACCCGGG 
    TTGGGGGGAT TCCCCCGGG

AT1G16710.1

Model type
Protein coding
Short Description
histone acetyltransferase of the CBP family 12
Curator Summary
Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.
Computational Description
histone acetyltransferase of the CBP family 12 (HAC12); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity; INVOLVED IN: flower development, regulation of transcription, DNA-dependent, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1); Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0; Bacteria - 235; Metazoa - 1739; Fungi - 482; Plants - 447; Viruses - 18; Other Eukaryotes - 2682 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16710.2

Model type
Protein coding
Short Description
histone acetyltransferase of the CBP family 12
Curator Summary
Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.
Computational Description
histone acetyltransferase of the CBP family 12 (HAC12); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity; INVOLVED IN: flower development, regulation of transcription, DNA-dependent, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1).
Link
InterPro Scan - TAIR

AT2G31450.1

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14067 Blast hits to 14061 proteins in 2669 species: Archae - 367; Bacteria - 9308; Metazoa - 224; Fungi - 193; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31450.2

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14133 Blast hits to 14127 proteins in 2683 species: Archae - 365; Bacteria - 9377; Metazoa - 224; Fungi - 192; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Link
InterPro Scan - TAIR