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GT15115

CSHL Arabidopsis genetrap mutant lines

Original: GT15115

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15115

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4136 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon21 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon20 (CDS)
    Flanking Genome Sequence: GT15115 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACC 
    GATTATAGAT AAGACTCTTT GCCGAAGTTC ATGAATGACC TGAAAATTGA 
    GCAAACCAAG AAGGCTTAAT ACAAAAGACC AATCTTTTTG AACCGAATAA 
    TTATAGAAAG AGGAAGTCGA CGAGAACGAA CGGATTTGGA AGAAGAGAGC 
    TTAGCCCATG TTTGGATATG GGCACTGCTG GTTTTGAGGT GAGAAGAGTA 
    GGCAGCTTCT GCGTTTATGA AGTAGACTGA GTTCTCTGCT GCCTCAGCAA 
    CCCAAATTTC GTTTGTCACA TCCTTTGCTC TTTTAATTAG ATTGCAAAAT 
    CCGACCTGCC AAAAATTAAG ACCCATAACA AGCATATATT TTTCAAAATT 
    TAATCTCTTG GTGCATATTC TCTCTGTGTA AAACTAGACA AAGATTAGAA 
    TTTGTACATA CCACGGATCC AACCAAATTA TGGCTGATGT GGGAAACAGA 
    GCTATCATCC ATGAATGAGG TGCTGAAGCT TATAGCAAGA AGACTGTTTG 
    AGATTTCCCC TGAATGTTGT GCGGATCCAT CTGTCACAAA CACCCACTGC 
    TTCTTTTGTA GAACATCCGT GTATGCATTT CCAACATATA CAACGTACGC 
    AGCGATATCA AATTCACTGA AGGACATAAT TAGAGATG

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR