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GT15121

CSHL Arabidopsis genetrap mutant lines

Original: GT15121

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15121

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16440357 [Map]; Strand: w
      • AT5G41071.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 106; Region: intergenic
      • AT5G41080.1 - [+] show detail - PLC-like phosphodiesterases superfamily protein
        Distance: -1387; Region: intergenic
    Flanking Genome Sequence: GT15121 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC ACAAACGTCA 
    TTCTCGCAAA CCATAATGTT TATATGGTCC AAAATCTTTA CACAAAGAAA 
    AATGTAACTT GTGGATGTGT GAAATTTATA ATTTCGAATT ATTAAGTTTA 
    TTTGTTGGAA CCGACGTTAC AGAGCAAAAC CATTAATGAT GAAGAGTGGG 
    AAGCAGAGCA GAGCATTCGG CGCATTAATG GAGGAAGACA AAACAAAACC 
    CATTAATTGT TTTCTTGCAA ACTCCCATTT CTCTTCTTC

AT5G41071.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41080.1

Model type
Protein coding
Short Description
PLC-like phosphodiesterases superfamily protein
Computational Description
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR