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GT15126

CSHL Arabidopsis genetrap mutant lines

Original: GT15126

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15126

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7750195 [Map]; Strand: c
      • AT2G17820.1 - [+] show detail - histidine kinase 1
        Distance: -1975; Region: intergenic
      • AT2G17830.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -4015; Region: intergenic
    Flanking Genome Sequence: GT15126 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATTT 
    CATGGTGATA ATTAATTTTG ACCAAACTTT AGTAAGAATC TTTGGGAGCT 
    TCAAGATCAA GTAACAAATC TATAAAGCAT ATATAGTCGG TGGTATTAAC 
    AACCCGTGAA TTTGGTAAAA TAAAGTTACA AATTTATTCG TAGTTCTCTT 
    TAATAAGTAC AATATATTTA AGGTTGATTT AAAGGTATTT TCATTTGACA 
    TATTTGATTT TTATTTGTGT GTTGTATTAA TATTAACCGG TTTTGGATAA 
    AATTTGGCTG ACTCAACTTA GTCAATATAT TACCATTCAT CTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10774707 [Map]; Strand: w
      • AT5G28715.1 - [+] show detail - transposable element gene
        Distance: 4230; Region: intergenic
      • AT5G28720.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1424; Region: intergenic
    Flanking Genome Sequence: GT15126 - 5-prime edge 
    CGGTTTATTC GGTTTAAAGG GGAACACATA TAAAAGCCAA AAAAGCCTTG 
    GT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15126 - 5-prime edge 
    AAAAAATTTG GTTAAAAGGT CTTTGCTCGC GGAGAAAACT AAAGA

AT2G17820.1

Model type
Protein coding
Short Description
histidine kinase 1
Curator Summary
Encodes a member of the histidine kinase family.
Computational Description
histidine kinase 1 (HK1); FUNCTIONS IN: osmosensor activity, protein histidine kinase activity, histidine phosphotransfer kinase activity; INVOLVED IN: response to water deprivation, seed maturation, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase (TAIR:AT2G47430.1); Has 149976 Blast hits to 132540 proteins in 3044 species: Archae - 792; Bacteria - 133304; Metazoa - 35; Fungi - 2288; Plants - 2106; Viruses - 27; Other Eukaryotes - 11424 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G17830.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G42460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28720.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR