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GT15141

CSHL Arabidopsis genetrap mutant lines

Original: GT15141

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15141

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1531874 [Map]; Strand: w
      • AT4G03450.1 - [+] show detail - Ankyrin repeat family protein
        Distance: -94; Region: promoter
    Flanking Genome Sequence: GT15141 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTT 
    CTGAAGCAGG TCTTGATAGG ATTGAGGCAC AGAGGTCAAC GGGTGTGTAT 
    CATGACCAAT CGAAACAAAG TTACGCCCCC ATTAATCTAA TAGAGCGCGG 
    AATCGTACGC GTATTCCGTG CACTAGGTTT CCTTCAAGTG GAAGGAGAAG 
    CAGCTACGCC CGCTACGGGA GACACCGAAA ATGTGCCAGA GTTCTTTACC 
    AATATCAGAT TCTCTGATCT GTTTGACCTC GCCAGTGAAT ATGTGCCTAT 
    GAGTCCTGAG ATTGTTAGCG CAGTAAGCGC GGGGGAGAAA GAATGGCTGG 
    AGGTATTGAG AAGTTACGGT AAGCCAATGG AATGTCTAAA GAGCGATGGA 
    GGATATTCTG TTCTTCACCT TGCTGCTGTT TGGGGTCGAG TTGAAACAGT 
    GAAGAGGATA GTCTCTGAAT GCCCATGTCT TCTTCTGGAG AAAGACTCGA 
    GGGACCAGCT TCCCCTTCAC GTGGCGGCCC ATGCCGGTCA TATAGCTGTT 
    GTTGAGGCTC TTGTTGCGAC ATTAACATTT GTCTCAGCTA CACTTTCTGA 
    AGAAGAGAAG GAGAGAGTGA ATGTATATGT TAGCAAGAAC ATAGATGGAG 
    ATACTCCTCT GCACTTGGCC TTGAAAGGCG ACAATGTGAA GACAGCTACT 
    TTTCTGGTGA ACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1557307 [Map]; Strand: w
      • AT4G03505.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TA...
        Distance: 0; Region: exon1 (CDS)
      • AT4G03510.1 - [+] show detail - RING membrane-anchor 1
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT15141 - 5-prime edge 
    CTTTCTCCCT GTTCAGAACT GTCCATCCTC AATCCTGAAA TCATCAGACA 
    AACACAGTTT TAAGTTCCCT AACCAAATGT CAACGATACC AAGAAGAGGA 
    AGGAGAGACT TACGAAATGT AAAGGAGATC AGAAGTACAA GAGGAGTTCC 
    TGAAGTCTGA TGGAAGAGAG AGACTATATT TTCGTCCATT TATAAAACTC 
    CATCTGTGTC TCAAAGCTCA GAGTAAGTTT AATCAAAGTC AATGCAGAAA 
    CAGAGGTATG GTCATTTTTT AATCCGAAAT AAACCTAACA CCTCGATTAC 
    AGAGTTGTAG TCTTTACTCT TTCGAGTGAT TGGGGTAATC TAAAGTCAAC 
    TTTATAAAAT AAAATAAAAA AAACTACGTA AATTTACATA CCCCAATATA 
    ATGCATTTGA AAAGCTTAGT TTTGATAGTT CTACCCATGG GCTGAATTAT 
    ACAAACACAT GCAGATCAGG CCTATTAGGT TGGCCTTTTC TGTAGACGAC 
    ACTATCCTCC AGATCAAATC TACACAAGAT TTAACCCAAC ACAAACGAAC 
    TCCTCAACAT TAAGCAACTT TGATTTGTTT CCAACACAAA TGTACATTTC 
    TTTGACTATG TTTCCTTACA CTTGAAGAAA CTGAACAGTA GCAGAATTAA 
    GCTAGCTATG AAAACCTAAA ACAAGAGAAG GCACAGAACA ACGCAACACA 
    TAAAGAAGAA GAAAATTCTT CCCAGCGATT TATCTGCT

AT4G03450.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein
Computational Description
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03440.1); Has 22492 Blast hits to 11630 proteins in 488 species: Archae - 24; Bacteria - 1675; Metazoa - 12211; Fungi - 1719; Plants - 2554; Viruses - 43; Other Eukaryotes - 4266 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03505.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03510.1

Model type
Protein coding
Short Description
RING membrane-anchor 1
Curator Summary
RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.
Computational Description
RING membrane-anchor 1 (RMA1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 2 (TAIR:AT4G28270.1); Has 3991 Blast hits to 3981 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 2157; Fungi - 553; Plants - 874; Viruses - 19; Other Eukaryotes - 388 (source: NCBI BLink).
Link
InterPro Scan - TAIR