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GT15144

CSHL Arabidopsis genetrap mutant lines

Original: GT15144

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15144

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9496519 [Map]; Strand: c
      • AT4G16860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -703; Region: promoter
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT15144 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CTCCCTACCC AATACTAGGC CTTTCTCCTT 
    ATTTGTACGG ATGAATCTCT TATTGAATCT TGATCAATAT ATAATATACG 
    TATGAATTAC CTGGACGCCT TCCCATAGCT TCTCAAGCTT GTTGTTTCAT 
    CTCACTCGA

AT4G16860.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.
Computational Description
recognition of peronospora parasitica 4 (RPP4); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 24682 Blast hits to 14766 proteins in 601 species: Archae - 8; Bacteria - 1131; Metazoa - 1818; Fungi - 127; Plants - 20736; Viruses - 36; Other Eukaryotes - 826 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR