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GT15160

CSHL Arabidopsis genetrap mutant lines

Original: GT15160

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15160

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26874518 [Map]; Strand: w
      • AT5G67360.1 - [+] show detail - Subtilase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT15160 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTTAAA 
    CACTCTCTCG TCTTCTCCTT CGATCCAGAG AGAGACACAA CACACCATCT 
    CAATCATGTC TTCTTCGTTT CTCTCCTCCA CTGCTTTCTT CCTCCTCCTT 
    TGTCTAGGAT TCTGCCACGT GTCCTCTTCC TCCTCCGACC AAGGAACTTA 
    CATCGTTCAC ATGGCTAAAT CTCAGATGCC GTCGTCTTTC GACCTCCACT 
    CTAACTGGTA CGATTCATCC TTCTCTCGAC TATCTCCGAC TCAGCCGAAT 
    TGCTCTACAC TTACGAGAAC GCGATTCATG GATTCTCAAC ACGGCTAACT 
    CAAGAAGAAG CCGACTCGCT CATGACTCAA CCTGGTGTTA TCTCCGTTTT 
    ACCGGAGCAC CGTTACGAGC TACACACCAC TCGTACTCCT CTCTTCA

AT5G67360.1

Model type
Protein coding
Short Description
Subtilase family protein
Curator Summary
Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.
Computational Description
ARA12; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, seed coat development, mucilage metabolic process involved seed coat development, mucilage extrusion from seed coat; LOCATED IN: extracellular region, apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT2G05920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR