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Mutant Lines
GT15161

GT15161

CSHL Arabidopsis genetrap mutant lines

Original: GT15161

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15161

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 19831731 [Map]; Strand: c
- AT5G48905.1 - [+] show detail - low-molecular-weight cysteine-rich 12
  Distance: 0; Region: exon2 (CDS)

AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATAG 
GGAACTGTGT TTCAAACAAT TGAAAGGATT CGGGAGTTGT ATTGAGAAGC 
CATCAGGCTC TTCTAAGTAT ACATGTAATT GTTTCTACAA TTGTGGTCCA 
CCCGGATTTT TTTAGAACGC TCGATAATGT AAACTCAATG AAACAATAGT 
TTAATTTTCT ATGGATTACA AAATGAAAAT TTATCTTTAA ATTACAAATA 
ATGTAATAGT TTAACAAAAA ATGAAAATTT ATTTTTATTT TAAAATTACA 
AATTTTTTAT ACTTGCCATA TTTAAGGTTT GTTCTTCTGA TAGTATATTA 
CTATATTGTG CTTTAACAAT TTAATCACAC AAAATCAATT TCTACCTCAT 
CGGATTATCA CAGGCCCATG AACAAATGAT ACACATCAAA CCCTAAATTG 
GAAGCATAAG ACAAGCTAAA GACTAAGAAG ATTGGTACCC TTTGCGAGAT 
TTGGGACGAG AAAATAGCTA GAGACGAAGA ATCTCCTTAG ACGAGGAGAA 
TAGATACGAG GAGATAGCGA GAAAGTCTAA ATTTCGTTTT CCCCCAAATG 
TGTAAATTTT AAAGATATTT TCCGTATGAG CTAGCCCATT ATGCCCGCGA 
ACAAAATTGG TCTTTAGACC ATATGATCCG TTTTAGTTGC GGGCTGACCA 
CAGACCGTCC ACAATATTTT GGACTGAGCT TAGCCCATGG TTGGATGACC 
ATTTGACAGT TCTACTTATT AAAGCGATAC AGCTTGTACA ACTTTGACAG 
TTACCAATCA CAAAACTT

5 prime edge [+] show sequence

Chromosome: 5; Position: 19828861 [Map]; Strand: c
- AT5G48900.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon6 (CDS)

AAAGAAGAAA ACTTTAGTAA CTATTAACAC CGGCGACCAC CTCTGCAATT 
AAGAGCACCG GCATTGTAGG TAATGACGCC AACAAGAGAT GATGATTTGG 
CTGCTAAACT TGAAGCTCTA GCGTAGCTAG CTCCAAGACC TGATCCAGAA 
CGTGTGAAGA AAGCTCCGTT TAAAAAAAGA TCTCCTTCTG ATCTCCAATT 
CCAATGCCTC CATTGCCATT GCCCTGCATA GTCTCTCTTT GTCACCTGAA 
ACATCCCATA AGTTTTTGCT GTAAGAATTT TGTTGAAACT GTAATCTATA 
AGTATAAGGG TTATAGTTTG ACACTAAGTC AAAAGTCAAG AAAGATCGGT 
TCTTTATTTG ACCTAGTCGA CCTAACTCTT GAAAGTACCT CTTTAGCAAA 
CCGGTTTCTT GGGGCGAGAT ATCTATTTCC TTGGCTGTTA ATGGTAGGAC 
TCGCACTGCC ACCGATCGCA TACATTTCCC AATGTGTATA GTCATTGTTA 
ACTACATGAA AATATCCATG CCTAC

AT5G48900.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G48905.1

Model type: Protein coding
Short Description: low-molecular-weight cysteine-rich 12
Curator Summary: Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description: low-molecular-weight cysteine-rich 12 (LCR12); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 21 (TAIR:AT4G29283.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR