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Mutant Lines
GT15162

GT15162

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT15162

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 19474465 [Map]; Strand: w
- AT1G52290.1 - [+] show detail - Protein kinase superfamily protein
  Distance: -2016; Region: intergenic
- AT1G52300.1 - [+] show detail - Zinc-binding ribosomal protein family protein
  Distance: 433; Region: intergenic

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGACACC AACAATGTTT 
TTCATGCAAT TTGCTTAATC AAGGATAATA TGCTAAGAGT TCTATAATAT 
GTATCTTTGT GACCAATTAA AAATGTGGTA TGTATTTGGT TGAACCTAAG 
TGATCGTTAC AAAACATCGA AAACATTTAT TTTCTTTAAA ACCTAAAATA 
CATTTGATCT AGTGATAGCG AAGCGAATTG TAGAATAAGC GGATTAAATA 
ATAGGGTGTG ATTAGTTTTG AACAAGCGAA GTAGAATAAT GTATAAAAGG 
TAAGAGTAGT TTTGAAAATG GATATTCTAA AAATGAAATT TCTCAAATAT 
TCTACAAAAA CTTATGTAAA AAAATGTTTT TTTAACACTG GATGACAATT 
CTTTGAACCA CACCACACCT AATTTTTTTT TTCTTCCTCG TTTTGA

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 19474532 [Map]; Strand: w
  - AT1G52290.1 - [+] show detail - Protein kinase superfamily protein
    Distance: -2083; Region: intergenic
  - AT1G52300.1 - [+] show detail - Zinc-binding ribosomal protein family protein
    Distance: 366; Region: intergenic
Flanking Genome Sequence: GT15162 - 5-prime edge
```
CCTACTTTCT CCCTGTTGGT GTCCATGGAA ATTCATAAAA TCAAAGCATT 
CATGCAGACT AAGACAGTAA GACCACAATC GCAATCCGTC AAGGTGACCC 
AATTATCATC GTGGACGAGG ACACTGAAGT GTGGAAAAAC CTAGATACGA 
GAAACCCATC TCTTCAAGTC TTCAACTCAT AAGCTCATCT CCTTACCTTT 
TAAGATCAAA AGCCCATATT TTC
```
5 prime edge [+] show sequence
1. Chromosome: 1; Position: 19474559 [Map]; Strand: w
  - AT1G52290.1 - [+] show detail - Protein kinase superfamily protein
    Distance: -2110; Region: intergenic
  - AT1G52300.1 - [+] show detail - Zinc-binding ribosomal protein family protein
    Distance: 339; Region: intergenic
Flanking Genome Sequence: GT15162 - 5-prime edge
```
GAAATTCATA AAATCAAAGC ATTCATGCAG ACTAAGACAG TAAGACCACA 
ATCGCAATCC GTCAAGGTGA CCCAATTATC ATCGTGGACG AGGACACTGA 
AGTGTGGAAA AACCTAGATA CGAGAAACCC ATCTCTTCAA GTCTTCAACT 
CATAAGCTCA TCTCCTTACC TTTTAAGATC AAAAGCCCAT ATTT
```

AT1G52290.1

Model type: Protein coding
Short Description: Protein kinase superfamily protein
Computational Description: Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: proline extensin-like receptor kinase 1 (TAIR:AT3G24550.1); Has 117666 Blast hits to 116327 proteins in 4415 species: Archae - 105; Bacteria - 14380; Metazoa - 43397; Fungi - 9805; Plants - 32502; Viruses - 416; Other Eukaryotes - 17061 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G52300.1

Model type: Protein coding
Short Description: Zinc-binding ribosomal protein family protein
Computational Description: Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1); Has 991 Blast hits to 991 proteins in 346 species: Archae - 293; Bacteria - 0; Metazoa - 303; Fungi - 141; Plants - 122; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link: InterPro Scan - TAIR