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GT15163

CSHL Arabidopsis genetrap mutant lines

Original: GT15163

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15163

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15770868 [Map]; Strand: c
      • AT2G37590.1 - [+] show detail - DNA binding with one finger 2.4
        Distance: 249; Region: intergenic
      • AT2G37600.1 - [+] show detail - Ribosomal protein L36e family protein
        Distance: 3377; Region: intergenic
    Flanking Genome Sequence: GT15163 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC TACCGTTTTC ATCCCTGCCT 
    AGGACTTATA TATCGTTTAA TTTGTAGTTA GTTATTTCAT ATTTAGTGAC 
    TAGTAATTTC TGGCATACTT TGAAGCCAAA TGATTATATA TGTTAAATTT 
    GTAAACCACA CTGTTTTAAC CGGAAATCGC CTAAAGAACA CTAGTTTGGT 
    CAAATAGTTT CTCCGCAGTT CGCTCTCCTC TTCAGTCTTC ACTGATCGAA 
    TTTGAATAAA TGATATAAAC TGAAAGAGGA AATATACGTC TCTTTTATTT 
    GCTTTAATGA ATCCACAATT AGCCAAATTT CCCTTCATAT CTCTACTAAA 
    GAATCCCAAA ATAGAGGAAT CTAAAATGAA TTGCTCGTTC ATATCGACAA 
    AAAACATAAA CTTCCATGAT ACCACAAACA CTGTCTGAAA CAAAATCTTT 
    TCATTTGTTT CAGCATGCTT TTTCAAATAA TTCGAGTCTG AGTTAAAGGT 
    ATACTTTACC CAAATAAACG CAAAATTTAC AAGGAATATT GTTTAATTCT 
    AGAGATTGAA GATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15770692 [Map]; Strand: c
      • AT2G37590.1 - [+] show detail - DNA binding with one finger 2.4
        Distance: 73; Region: intergenic
      • AT2G37600.1 - [+] show detail - Ribosomal protein L36e family protein
        Distance: 3553; Region: intergenic
    Flanking Genome Sequence: GT15163 - 5-prime edge 
    TTCCCCCATT AAGGGGGTTT GATAGTAGTG TGCAAACTCC CCCGATAACG 
    AAAGAGGGTT GTCGACAAAA ATAACAAAGG GATAGTCTCC CACACACCCA 
    ATAACTTAGG CTACCTAGAA CTAGAAGCAT AGTAGATTGA GAACGAGGAA 
    AGTAGTAAAC AACATTAACT AATCAAAAAC GAAAAATAAG ACAAAATTAA 
    CCTGGTAACT AGTTTTTTCC CCACCAAAGT ATACCCTCAA GTTTCCTTTT 
    TGTTGTGTGG TTGAACTCAA CGAGAAGAGC CGAAAGCAGA AAGATCAGTC 
    CAGGAAGAGC AATTACCATT GACATTAACC CATTTGTAAG GATTATCTTC 
    AACTTTAACC GAAGAAAACT GCGATGCTAA AGCAGAAGAG ATTGACGCTG 
    AAGTTATCCT CGGCGACTCA AAA

AT2G37590.1

Model type
Protein coding
Short Description
DNA binding with one finger 2.4
Computational Description
DNA binding with one finger 2.4 (DOF2.4); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF-binding protein 3 (TAIR:AT3G55370.2); Has 1447 Blast hits to 1391 proteins in 103 species: Archae - 4; Bacteria - 20; Metazoa - 104; Fungi - 10; Plants - 1085; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G37600.1

Model type
Protein coding
Short Description
Ribosomal protein L36e family protein
Computational Description
Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT3G53740.4); Has 755 Blast hits to 754 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 355; Fungi - 139; Plants - 140; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Link
InterPro Scan - TAIR