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GT15168

CSHL Arabidopsis genetrap mutant lines

Original: GT15168

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15168

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26141445 [Map]; Strand: w
      • AT1G69530.1 - [+] show detail - expansin A1
        Distance: -391; Region: promoter
      • AT1G69530.2 - [+] show detail - expansin A1
        Distance: -391; Region: promoter
      • AT1G69530.3 - [+] show detail - expansin A1
        Distance: -391; Region: promoter
      • AT1G69530.4 - [+] show detail - expansin A1
        Distance: -391; Region: promoter
      • AT1G69530.5 - [+] show detail - expansin A1
        Distance: -391; Region: promoter
    Flanking Genome Sequence: GT15168 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCT 
    TGGGATAATA TATTTAGTCT ATCAAGAAAC AATTTAAGCT TGAGAAAGTT 
    TTAGTCTACA AAATAGGTAG TCTAAATTTT GAATTTGGTA TAGTAGAAGT 
    AATGGATTAA GGTCAATATG GAGGCTGGAG AAAGTTTTAT TACTGAGTGT 
    GAAATTGAAT ATTCAAAAGA AAAGCAAAGA AAATATCATA AAGACAAAGA 
    AAATTCAAGT TGAAATCCAA GTGGGTCATA GTGGTCTGCT TTGAGATCGA 
    TGTACCACGA CACGTATAGT TTTGTCGTTC GTTTATCTCA ATCTAATGTT 
    TCGATGCGTA ACCATCTTAT TATTTATTTT AAAATCAGCA AACCTATGTA 
    CGATCGATGA AGAAGTCGTG TCTGGTTTAT GAGAAAAAAT GTCGCTGGAA 
    GTACATATAT TGAATTACTT AATGACAAAA TAAAAATTTT ACATGTGTTT 
    GGTGATGAAG TATCTAACTT TTAAGGAGCT TCTACGGTGT TTCTGCAAAT 
    GTATTTATTA GAGTTAGATA GATTTTTTAG AGTCACATTT TTTTAGTTTG 
    CATATCGAGA AAATAAATGC ACATTAAATT TAATAAGGTG AAGAAAGTTC 
    ACGGCAGAAA TCGACGGCCA AGTTTCCGTA ATTTCAGCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26141495 [Map]; Strand: w
      • AT1G69530.1 - [+] show detail - expansin A1
        Distance: -341; Region: promoter
      • AT1G69530.2 - [+] show detail - expansin A1
        Distance: -341; Region: promoter
      • AT1G69530.3 - [+] show detail - expansin A1
        Distance: -341; Region: promoter
      • AT1G69530.4 - [+] show detail - expansin A1
        Distance: -341; Region: promoter
      • AT1G69530.5 - [+] show detail - expansin A1
        Distance: -341; Region: promoter
    Flanking Genome Sequence: GT15168 - 5-prime edge 
    TTCATCCTAC TTTCTCCCTG TCCAAGGTAA AGTTGGTGTT TATGTGTGTT 
    TGAAGGCGCC TGAAAAAAAT AGAAACCACA CGACCCGTCT TGTATGTAGC 
    TCACATGTGT CTTTGCCTCT TTGCTTTTTC ATGCCATTAA ATATTAAATC 
    TTCAGCGGTT TTTGGTCCCC AACAATAAAA ATATATTTTC TTACTATATT 
    CTATAGTTCA TTAATATTAC ATTGAATAAA CCTAATGTTT TTTAATATGA 
    AAAACCAAAA AAATAAAATT GCATTCGGAG TTTTGGTCTT GTTTTGAAAA 
    GAAAAGAAAA AAGTGGAAGC TAGTTGCATT AACATTAAAC AGTGGCAAAA 
    ACGTAAATCA TTCACTCACT AAGTTTTTCT ATAAATTGAA CTACTCCCCT 
    CCTCTGCTTT TTCCAATTCT AAACCAAACA ACAGATTCTC ATAATCATCT 
    CTTCTTTTTT CCTCTTTACG AAAAGAAGAA AGATCAAACC TTCCAAGTAA 
    TCATTTTCTT TCTCTCTCTC ACACACACAC ATTCACTAGT TTTAGCTTCA 
    CAAAATGTGA TCTAACTTCA TTTACCTATA TGCAGGTTTA CACAAAAAGA 
    AAAAAGAACG ATGGCTCTTG TCACCTTCTT GTTTATTG

AT1G69530.1

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2218 Blast hits to 2214 proteins in 171 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.2

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Barwin-related endoglucanase (InterPro:IPR009009), Rare lipoprotein A (InterPro:IPR005132), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2218 Blast hits to 2214 proteins in 171 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.3

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.4

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.5

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1).
Link
InterPro Scan - TAIR