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GT15171

CSHL Arabidopsis genetrap mutant lines

Original: GT15171

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15171

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10934701 [Map]; Strand: c
      • AT5G28913.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15171 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGAAAAA AGCTTCAGAA 
    AGAGAGAGAG AAATGAACAG TAGAGGAACG ATTGTCCAAG TGAAAAAATA
    TACCAACAAT TTAAATCATG CCAATGGTAT ATTATTGTTT TATTTTTGAT
    ATCTTTGTGA CATTTATTGT AGATCGACAT TGTATCTCGG GGATGTAATG
    AACGTGAACT TTGATAATCA ATGATTAAAA CGTGTTTGGA AGCATTTTTC
    TTTAAGAGTA TTATCCTTCT CAAACTTTGG GTTACACTAA ATATCTCCTA
    AGATATGACA ATCAAAGTAC TTTATATTGT TCTAGGCTAG ATACAAGAGA
    AATAAATAAA AGTTTTGTGT GTTTCACTAA AGATTCTCTC AATCTTTAGT
    TTCCTGAATC TCTCTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10934635 [Map]; Strand: c
      • AT5G28913.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15171 - 5-prime edge
    TCCTACTTTC TCCCTGCTTT TTTCAATTTC TTAGATCTAC TTTGTTTTTC 
    ACCTTCGTTC TTCATGGTAG GTCCTAGATT TGCAAGATGA TGCAGGAGTG
    AGGCAAGCTT ACTTCTCCGA CATTGGAGTG GTGTGGTTTT TCCGTTTAGC
    GTGGCAGCGG TGGCCCTTTC TTGGCGGACG AGAGGCTTCT CTTCCAAGTC
    TTCCTGGTTA TGGATGTCAG TGAAGATCGG TGGAGTCTTT CTTGGCTCAA
    CCGATCGGAT AAAAGCTGTA GTTGTGGCGG AAGACGCTGC GGATAGGTGG
    GTTTCCGGTG CGTATTTGAT GTTTAACGGC AGATCCAGTT TTGGATCTGA
    GATGGCTTAT GCGGGATTTG GTTGTGGAGG GGTTGTCTGA GCCTTCACCC
    TTCCCTAACC GCCGTGTTTT TGTCTCCATC GGACGAGATT GAAGATTGCT
    TTGCTTCTGG AAGATTTTCA GAGCTACGGT TTTGGAGGTC AGAGGCTTGG
    AAATGAGTGG TCATTTTGCT AGGTTGGGGG ATCGACCAAA TTGGGTGGCC
    GAGAGTCCGA AACTGGATTT ATTCCGTAAA GCT

AT5G28913.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
Member of Sadhu non-coding retrotransposon family
Link
InterPro Scan - TAIR