1. Home
  2. Mutant Lines
  3. GT15172

GT15172

CSHL Arabidopsis genetrap mutant lines

Original: GT15172

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15172

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16818181 [Map]; Strand: c
      • AT5G42053.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 309; Region: intergenic
      • AT5G42060.1 - [+] show detail - DEK, chromatin associated protein
        Distance: 207; Region: intergenic
    Flanking Genome Sequence: GT15172 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTCCTG 
    ATGTGTGCAA ACCTGATGGT TGGAATCTTG CTAACCCACG GTCTGATCAG 
    TATAAAACAC AGTCAACAAT CCATTGGAAA GCGAATTACA AGCTCTAATC 
    TATTATTTGC AATATTCAGC TGCTGGAGCA AAGGCTATCG AAAGGTGTGT 
    TTCCAAGGTA ATAACAGACA AGTATCTCTT TTCCTGAACA AAAAATAGTG 
    CCATCAACTT CAGAATCTGT AACTGAATTC GACACATTAG GACTTGGCAA 
    GCCAAGTTTG AAGAGGTGTC CTGCAAATTT TCTTGCAAGA GCTCAAATTC 
    CTCAGACACA TTGTCTTATT GCTTAGACAC ATGTTTCATA TCGGACAAAA 
    ACATTAGCTT CCATGAACCA GAAACACTAT TAAAAAAAAA AAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4436703 [Map]; Strand: w
      • AT3G13590.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15172 - 3-prime edge 
    GCTAGAGACA TATTTGAAGA ATCTCCACGC GTTTCTAGAG ATGCAATTTG 
    CAAATTGTGG AAAATTACGT TTTCTTTTGA ATCATTCGCA TATTATTGGC 
    GTGAATGTAG ATCCCATTTC CATAAGGATT GTCTCCCAAT AATCAATGCA 
    AAGATTCATG AGGATACACT AACTTTCATT CGTAGAGAGA ATCCGTTCCC 
    TTGAGATGTT TGTGGGAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16818099 [Map]; Strand: c
      • AT5G42053.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 227; Region: intergenic
      • AT5G42060.1 - [+] show detail - DEK, chromatin associated protein
        Distance: 289; Region: intergenic
    Flanking Genome Sequence: GT15172 - 5-prime edge 
    GTAGCATTAA CGGCAACTAT CAAGCTTCTT GTCCCGTCGT TACCAATAAA 
    TTTGATGAGT GGACCAAAGG CGGTCCAGTT ATCAAACCAA AAGCTACCAA 
    TGTTACACCT GATAAATTTC TCAGCCAACA CTCTCAAGTC TCAACCTTAG 
    AATAAACTTC TAGTTCCATG AATCAGCAAC CCTTTCAGGG TTCCAAAAGC 
    TTGTAGTTTT GTTGCATTTG TTATGCACTA TTATTACCAG TTCGTATAAA 
    ATATACATAA ATGCCGATAA TCTATATAAA AAAAAAAAAA GGTTATTCTT 
    AATTGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16818099 [Map]; Strand: c
      • AT5G42053.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 227; Region: intergenic
      • AT5G42060.1 - [+] show detail - DEK, chromatin associated protein
        Distance: 289; Region: intergenic
    Flanking Genome Sequence: GT15172 - 5-prime edge 
    GTAGCATTAA CGGCAACTAT CAAGCTTCTT GTCCCGTCGT TACCAATAAA 
    TTTGATGAGT GGACCAAAGG CGGTCCAGTT ATCAAACCAA AAGCTACCAA 
    TGTTACACCT GATAAATTTC TCAGCCAACA CTCTCAAGTC TCAACCTTAG 
    AATAAACTTC TAGTTCCATG AATCAGCAAC CCTTTCAGGG TTCCAAAAGC 
    TTGTAGTTTT GTTGCATTTG TTATGCACTA TTATTACCAG TTCGTATAAA 
    ATATACATAA ATGCCGATAA TCTATATAAA AAAAAAAAAA GGTTAATCTT 
    ATTTGGGAAA CAAGGGGTTG ATGGGCCCAA ACACAAAGTC AGCAAAAGTT 
    TCACCCCATC AAAAACAAAC CCAACGGGCC CCGTTAAAGC GGGGCACAAT 
    CGGGCCCGCG AAATTAGCGC CAAAACAAGC CCAGGGGTTT GTTCCCCCAA 
    AGCGGGAACG CTTATTTCAA AACAA

AT3G13590.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G42280.1); Has 1359 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1347; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42053.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42060.1

Model type
Protein coding
Short Description
DEK, chromatin associated protein
Computational Description
DEK, chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK, chromatin associated protein (TAIR:AT1G64490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR