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GT15173

CSHL Arabidopsis genetrap mutant lines

Original: GT15173

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15173

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17888833 [Map]; Strand: c
      • AT2G43010.1 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon7 (3UTR)
      • AT2G43010.2 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: GT15173 - 3-prime edge
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTGGTG 
    AGCCACTTTT TTACTTCCTT ATTTTTGGTA TGTTTCTTTT TTATATCTAT
    CTTTCTGAAC ATACTTAAAA CGTTCAAGGA TGTATTATTA TAGAGTAAAC
    GTGCAACTTC ATTACGTTAT TTTCTGTATA TGTGAGTTTA TGTATGTCAA
    AATGACATGA TGAGATTTTT TGTAAACAAC ATCTTAAAAA CAGGACATGT
    GATTTTTGTA ATCGTAAAAA CTTTGGGATG CAGTTTATTT TCTAATCAAA
    ACAAGGATAT ATCTAAGTAA TCGAAATTTT TTTCGAAAAT AGAACTAGAT
    GACACTTATA GATTATAGAT CACACCTATT TTTGAAGATG TATCTAAAAG
    TCCATTCAAT TTTTCTCTGT TCCCCTAATA AGAAATCATA TGTTCATATT
    CAAAAAATAA GAAACACAAA AAAAAACTTT AAGAAAAACA CAGATGATCA
    ACCGTCTGGC TAGAGTTTGG AAAAATATTA ATATCTTATG ATTTCATATT
    GTTCCATAAA TAAATAAAAA ATCATAACAT AGGCTTTTCT TGCTGATTGT
    CTAAAATTAT GTATAGATGG AAAAAGCCAA ATCACATGTG ATGGAGCCAG
    ATTTGAGTGA GAGTCATGTG TCAATTGTCA AAAACATCGA CATTATAAGT
    CTTTAAGCCA TGTGCATACT GGTCAGAATC TATTTAGCAA TAATTGAGTT
    AAATATC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17888774 [Map]; Strand: c
      • AT2G43010.1 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon7 (CDS)
      • AT2G43010.2 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: GT15173 - 5-prime edge
    TACTTTCTCC CTGCTCACCA ACCTAGTGGT CCAAACGAGA ACCGTCGGTG 
    GTCTTCGTCG GCACAGACGA CGGTTGTTGA CTTTGCTGTC CCGCCGGTGA
    ACTAAATCTC AACATCTCCA TCGGCTGCAT CTAATAAAAA ACCACACAAC
    GTGTCAACTA AAACTACGTC GGTTTAACAT TTTTTCTTAT CTCGTATTAA
    TGTAGTAAAC CCAAAAAACA TTTTACCAAA ATCGTCGTTT AATAAACACG
    GCTTCGTATT GGCCTTACCT GAGTCGCGGC CTGCATGTGT GGGAACCCAC
    CGATGTATCT AGCAAACCGG TCGGAGATGA TCTGGTTTTG TACCGGGTTT
    TGGCAAACTA AACCGGGATT GTTCTGAATT GCAGACTGAT CCATAACCGG

AT2G43010.1

Model type
Protein coding
Short Description
phytochrome interacting factor 4
Curator Summary
Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Computational Description
phytochrome interacting factor 4 (PIF4); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 6 (TAIR:AT3G59060.1); Has 4545 Blast hits to 4539 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 192; Plants - 3373; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G43010.2

Model type
Protein coding
Short Description
phytochrome interacting factor 4
Curator Summary
Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Computational Description
phytochrome interacting factor 4 (PIF4); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 6 (TAIR:AT3G59060.1); Has 4535 Blast hits to 4529 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 936; Fungi - 188; Plants - 3370; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR