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GT15179

CSHL Arabidopsis genetrap mutant lines

Original: GT15179

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15179

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13327494 [Map]; Strand: c
      • AT2G31260.1 - [+] show detail - autophagy 9 (APG9)
        Distance: -94; Region: promoter
    Flanking Genome Sequence: GT15179 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATC 
    ACGAGTTCTC TTCCTCTTCT ATGATTTTAG TTTTACTTTG ATCTTTGGTT 
    AAAAAGGTAA TCTAACATTT ATTAGCTTGA ATCCAAAAAA AGTCTTTGCA 
    CAAAAAAAAA AGTTTTGGGG CCCAAAATTG GAATTTTTCC TGGAAAAATT 
    TTTTTTTAAC CACTTGGAAA AGGGGCCCAT TGGTTTGGGG GGGCCCCCGC 
    CCCAATTTTT AACCGGTCCA AAAAACCATG GGTAAAAGGG CCCTTTTTTT 
    CCCAACTTTA AAATTGGGTT TTGAAAAATA GAAAGGGGGC CCGTTGACCA 
    AAATTTTGGA ACCAAAACAA ATTCTTGGAA ACAAAAACAA ATTTTTGCCC 
    CCAAACCAAA TTAAAACCCA ATTGGACCCC CCAGCCCCCT TAATTTTTTA 
    AAGGGTAACC CAAAAAAAAA ACCCCTGGAA GTTTTTATTT TTTTTAAACC 
    GCCTTAATTT TTTTTTTGCC CCCTAACCCA AAACCCCAAA AAAAAAATAA 
    AAATGGGGGT TTATTTTTAA AACCCCCAAA C

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13327409 [Map]; Strand: c
      • AT2G31260.1 - [+] show detail - autophagy 9 (APG9)
        Distance: -9; Region: promoter
    Flanking Genome Sequence: GT15179 - 5-prime edge 
    TTTGGTTAAG TAATGTTGTA GAGAAGAGAA GAGAAGAGAA GAGGAAGAAG 
    AAAAGCCCAA ATCGAAAATT GAAAACTAGT ACTCCAAACT CCAAAGCATC 
    AATATTTTAT CACTCCTCTT TTCTTCCACG CAAACCCAAT TCTCTTCGTC 
    TTCTTCTTTT GCTTTTCTCC CCTAAATTCG TCGATCAAAT TCTTGTCTTT 
    TCAACTTCTT CATCGAATTT TCCATTGCCC ATAGCCTCTT TATATGATTC 
    CTCCTTCTCT AAAGCTTCGG ATTTTAAGAC AATTATATCT TCCTAGCTGC 
    TTAGAGACCT TTGCTTTCTA ATTGCTGTTC CTTTCGTGGG TCTCTGGTAA 
    GTTTTGATTT TCTCATCTGC TGTTATCGAG AAAGGCAGAT TTTTTTGTGA

AT2G31260.1

Model type
Protein coding
Short Description
autophagy 9 (APG9)
Curator Summary
Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence.
Computational Description
autophagy 9 (APG9); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 9 (InterPro:IPR007241); Has 489 Blast hits to 477 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 166; Plants - 51; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR