1. Home
  2. Mutant Lines
  3. GT15185

GT15185

CSHL Arabidopsis genetrap mutant lines

Original: GT15185

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15185

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95220 [Map]; Strand: c
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT15185 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCGCC 
    AAGTACTTCA AGCACGACGG CAATGTGCCT GCCGGCGAAG TCCGATCACC 
    GATCGATATC GACGGACATG GGACGCACAC GTCATCCACC GTAGCCGGCG 
    TTTTAGTCGC AAACGCGAGT CTCTATGGCA TAGCAAACGG CACCGCCCGC 
    GGCGCGGTTC CGTCGGCGAG GTTAGCGATG TACAAGGTTT GTTGGGCGAG 
    ATCCGGCTGT GCTGACATGG ACATACTCGC CGGATTCGAA GCAGCGATTC 
    ACGACGGCGT AGACATTATC TTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95161 [Map]; Strand: c
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT15185 - 5-prime edge 
    ACTTTCTCCC TGCTTGGCGC CGATTATTTT GCTGTTGAAG TTACATTAAT 
    TAAATATTTA TTATTTCAAT CAGAACCCTT ATGTTAACGC ATAATTCTAA 
    TTTGCTCCCT AAACTCTTAA ATTGATCAAC TAACTCCTTA TGTTAACGCA 
    TAATTCTAAT TTGCTCCCTA AACTCTTAAA TTCATCAACT AACTCCTTAT 
    TTGTTTTTCT AGCAATGACA TTTTCTTTAA CAATTGCTCA AGAGTTCATG 
    TTGCTTAGAG ATCAAGATTC TCTAGTGATC AAAGTTTGTA TTTAAAATCG 
    ATTAAAGTAG AAAATGGTAA GAGATAAATT GTATACTTGT TGCATCCGGT 
    GAAATTTTTA TAAGGTCCAC AAGATCCTTT CCATTTAGCC GGAGGAGGTC 
    CTAGACCATG GTCTAGGAAA CTCTCTGAGT CTGGCGTTAT TCCTGATTGT 
    TGTATTATAG GAAGGTTTAG ATAAATTATA AGAAGCATAA ATGAATAATA 
    TCGAATCAAT TTGCATATAG AAAAAAATAA ACCTGTATCA AGAACACCAA 
    TAATAACATC TCTCTCTGCT TTTAGATGTC TTTTTGCTGT CAAAGGAAGT 
    CCAACAAAAT CCCAAGATTT TGTCGTGTGA AGTTTGCGAT ATTGATTTCG 
    GGATACACTA ACAACTTCTT CCATCTCTGC ACCAGTGCAT GGATGGGAGT 
    TATATGAATC TCACTAGCTA GTGCTTTGTT TTGGGAAAAT ATCAAAAACA 
    AATAATGTTA CGTACCCATC ATCTTCTTAG CTTCATGTGG AGAAAGCTTG 
    GCAGCAAAAG CGTGGAAGGC TTTAGTGTAA CTATATACTT TTCTTTCCCT 
    TTGCTCTTCT TGG

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR