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GT15193

CSHL Arabidopsis genetrap mutant lines

Original: GT15193

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15193

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18699450 [Map]; Strand: c
      • AT5G46110.1 - [+] show detail - Glucose-6-phosphate/phosphate translocator-related
        Distance: 0; Region: exon8 (CDS)
      • AT5G46110.2 - [+] show detail - Glucose-6-phosphate/phosphate translocator-related
        Distance: 0; Region: exon8 (CDS)
      • AT5G46110.3 - [+] show detail - Glucose-6-phosphate/phosphate translocator-related
        Distance: 0; Region: intron8 (CDS)
      • AT5G46110.4 - [+] show detail - Glucose-6-phosphate/phosphate translocator-related
        Distance: 0; Region: exon8 (CDS)
      • AT5G46105.1 - [+] show detail - pre-tRNA
        Distance: -717; Region: promoter
    Flanking Genome Sequence: GT15193 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATT 
    CCTCCTGCCA TCATCGTTAA GTCACTTTCA TTATTTCTCA CTAGTTACGT 
    ATGAAAGAAG TAATGTCTTT TTTTGTTATT AATTAGGGTT TCTGGTTAAA 
    ATTTGTTCTT AGGTTGAAGG TCCTAAACTA CTTAACCATG GTTTCGCCGA 
    CGCGATTGCT AAAGTTGGAA TGACTAAATT CATCTCACTC GACTACTGGG 
    NTGGAATGTT TTACCATCTC TACAATCAGG TAATGTAAAA CTCAAGTTAC 
    AATCTTTAAC CATAAACTTG CGTTTATAAA GGAAACTAAA ACATTGAGGA 
    AACCACGGTT GCAGCTGGCT ACCAATACCT TGGAGAGGGT TGCACCGCTG 
    ACTCACGCGG TTGGAAACGT TCTGAAACGT GTGTTCGTGA TCGGTTTCTC 
    CATCGTTATC TTCGGTACAA GATTACTAAC CTCTCTTCAT ATATTTTTAC 
    TTATTAGACC AATCCCGAAT GAAGCAATTC AAATACTTTT ACTTGTCAAA 
    TATTTGCAGG AAACAAGATA TCGACACAGA CAGGTATAGG AACAGGAATA 
    GCCATTGCTG GAGTTGCAAT GTACTCTATC ATTAAGGCCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23152751 [Map]; Strand: c
      • AT5G57150.4 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G57150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G57150.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G57150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15193 - 5-prime edge 
    CCTACTTTCT CCCTGTAACT AATAGCATCT TTGATTATTG AGGCTTTATC 
    CATCTATCAG AAAACAAAAA CAGAGTCTAT AATAAGTTTG AATCCTGGAA 
    TTAGAAGACA AAAAACAGGG GGAAAAAGAG AAACCTTAGT GATATTGGGA 
    ACAACTGATC GAAGAGCGAA GAGTCTCTGG TTAAGTTTCT GTCTTCTGTT 
    TCTCTCCGAC ACAATATTCT TAGAAGCCGG CGACGAAGCA GCTCCATCCG 
    GCGAACTCGA ATCATACGAC CCAGAAATGG CTTCTTCCAA AGGCCAGCTT 
    CTTTTTTTTA AGAAAAAATT TTCAAATTTT CAGGTGGGAA GGCAAGGTAG 
    GGAAAAAAAA GGGCCAAAGA AAGAACCTGG CCTATTCCAA GTCTTCCTTT 
    TGGAAGAAGG GACTAGGTTC CCCGTAATTG GTTAATTTTT GGGC

AT5G46105.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Pro (anticodon: TGG)
Link
InterPro Scan - TAIR

AT5G46110.1

Model type
Protein coding
Short Description
Glucose-6-phosphate/phosphate translocator-related
Curator Summary
mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
Computational Description
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2548 Blast hits to 2546 proteins in 418 species: Archae - 2; Bacteria - 319; Metazoa - 501; Fungi - 418; Plants - 1031; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46110.2

Model type
Protein coding
Short Description
Glucose-6-phosphate/phosphate translocator-related
Curator Summary
mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
Computational Description
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2495 Blast hits to 2493 proteins in 411 species: Archae - 0; Bacteria - 311; Metazoa - 491; Fungi - 411; Plants - 1009; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46110.3

Model type
Protein coding
Short Description
Glucose-6-phosphate/phosphate translocator-related
Curator Summary
mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
Computational Description
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2191 Blast hits to 2189 proteins in 289 species: Archae - 0; Bacteria - 65; Metazoa - 435; Fungi - 400; Plants - 1036; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46110.4

Model type
Protein coding
Short Description
Glucose-6-phosphate/phosphate translocator-related
Curator Summary
mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
Computational Description
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2560 Blast hits to 2558 proteins in 418 species: Archae - 2; Bacteria - 316; Metazoa - 499; Fungi - 419; Plants - 1040; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57150.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57150.2

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57150.3

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57150.4

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3).
Link
InterPro Scan - TAIR