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Mutant Lines
GT15195

GT15195

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT15195

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23152818 [Map]; Strand: c
  - AT5G57150.4 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon3 (CDS)
  - AT5G57150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon3 (CDS)
  - AT5G57150.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon3 (CDS)
  - AT5G57150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon3 (CDS)
Flanking Genome Sequence: GT15195 - 3-prime edge
```
TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATTAGT TACATAGAAG 
GATTACAATA TGAAGAAAAG AAGCTCGAAG CTGAGATCAG AGAACTTGAA 
TCTACACCAA AGAGTAGCCT TAGTTTCAGC AAAGATTTTG ATCGTGATTT 
ACTTGT
```
5 prime edge [+] show sequence
1. Chromosome: 5; Position: 23152756 [Map]; Strand: c
  - AT5G57150.4 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT5G57150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT5G57150.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT5G57150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: GT15195 - 5-prime edge
```
TTCCATCCTA CTTTCTCCCT GTAACAATAG CATCTTTGAT TATTGAGGCT 
TTATCCATCT ATCAGAAAAC AAAAACGGAG TCTATAATAA GTTTGAATCC 
TGGAATTAGA AGACAAAAAA CAAGGGGAAA AAGAGAAACC TTAGTGATAT 
TGGGAACAAC TGATCGAAGA GCGAAGAGTC TCTGGTTAAG TTTCTGTCTT 
CTGTTTCTCT CCGACACAAT ATTCTTAGAA GCCGGCGACG AAGCAGCTCC 
ATCCGGCGAA CTCGAATCAT ACGACCCAGA AATGGCTTCT TCCAAAGGCC 
AGCTTCTTTT TTTTTAAAGA AACAAATATC AAAATCTCAA GATGGAAAGC 
AAAGTAGGGA AAAAAAAAGG ACGAAAGAAA AAACCTGTCG TATTCAAAGT 
CTTCGTTTTG GAGGAAGGAG CTAGGTTCCC AGAAATTGCT TAATTCTTGG 
CCGACAATAT CCTCCTTTTT CCAACAAAAT TTTCAAACCA AACTGTCTCT 
AGTTCGTTTC GTGG
```

AT5G57150.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57150.2

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57150.3

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57150.4

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3).
Link: InterPro Scan - TAIR