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GT15196

CSHL Arabidopsis genetrap mutant lines

Original: GT15196

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15196

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 718021 [Map]; Strand: w
      • AT4G01680.1 - [+] show detail - myb domain protein 55
        Distance: -442; Region: promoter
      • AT4G01680.3 - [+] show detail - myb domain protein 55
        Distance: -442; Region: promoter
      • AT4G01680.2 - [+] show detail - myb domain protein 55
        Distance: -606; Region: promoter
    Flanking Genome Sequence: GT15196 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGTAAATA ATTTTACTTC 
    AACACCAAAA GAAAATATAA GTTCACACAG TCACATCCTT TTCATAGCTT 
    TTAAAGTATT ATCTCTACTT TTATTCGTTT TCATAAGTTA CTGAAAAGTG 
    TGACTTTTAT ATCCATACTT ACTATATCAA ATATATGTGG GATTAATATT 
    CATTTATAGA AAATTTAAAT CGCAATAACT CAATATCAGC CATTAAATTT 
    TACATTATTA TCGTAATTTA CATCAAATTT TGCTATAAAA TAAAATACAA 
    TTATATCATA TTTCTGTTTT AGTTGAATTA TATAGTATTA TTTTATATAA 
    ATTTATTTCA CTTT

AT4G01680.1

Model type
Protein coding
Short Description
myb domain protein 55
Curator Summary
Encodes a putative transcription factor (MYB55).
Computational Description
myb domain protein 55 (MYB55); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 8918 Blast hits to 8213 proteins in 473 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 506; Plants - 5859; Viruses - 3; Other Eukaryotes - 1799 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01680.2

Model type
Protein coding
Short Description
myb domain protein 55
Curator Summary
Encodes a putative transcription factor (MYB55).
Computational Description
myb domain protein 55 (MYB55); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01680.3

Model type
Protein coding
Short Description
myb domain protein 55
Curator Summary
Encodes a putative transcription factor (MYB55).
Computational Description
myb domain protein 55 (MYB55); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR