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Mutant Lines
GT15202

GT15202

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT15202

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 20468 [Map]; Strand: c
- AT4G00060.1 - [+] show detail - Nucleotidyltransferase family protein
  Distance: -969; Region: promoter

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACTGTTT 
ACACTATATA GTAATCAATC GCCACCACAA ATTAAGCCCT ATATTTGTCG 
TTTTACTAAT AAACGAACGT ACAAATACAA TATATCACTC AACTTTGATT 
TAGTTTGAGA TGTTGTGTGT ACTTAATTAC ATAAATGAAT TTGTGCATGC 
GACAAGTATT TTCGGACATA TCCATATATA TACATTTTCT TGCAATGTAT 
AATACGATAC GAAGAGGGAG AAAATGACAT AAGAGGAAAA GAAATCAAAT 
CATATAACTC CAAAGGTCGA CACCAGTTGG TTTGACAGTT AAGTATGATA 
TATACACTCC CAAAAATATG AAAACGGTGG TTGCCATGTT CGTACAAAAG 
TTAAGAATAA TATATATGCT ATTTTTTTAA TCTATTATTC ACACATAAAT 
GTTTTTTTTT AACACCAAAT GTA

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 20416 [Map]; Strand: c
  - AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 350; Region: intergenic
  - AT4G00060.1 - [+] show detail - Nucleotidyltransferase family protein
    Distance: -1021; Region: intergenic
Flanking Genome Sequence: GT15202 - 5-prime edge
```
TCCATCCTAC TTTCTCCTAC TGTTTAAGGA TACTTATACT TACCTTGAGT 
AGTTGAGTTT GGCATTTTTC TCATGAATTT TCGAGTCACT TTTCGCTATT 
AATAATAATA TGACTTGTTC ACTCACAAAC GTGTGGTAAT GGTCCGCCCC 
AACTTGACCT GTTAACACCC AATCATTTTA CAAGCACCTT TAAAAAAAAA 
CATTCGCTTG CTTTTTGTTT CTTGAAGCA
```

AT4G00050.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00060.1

Model type: Protein coding
Short Description: Nucleotidyltransferase family protein
Computational Description: maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR