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GT15206

CSHL Arabidopsis genetrap mutant lines

Original: GT15206

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15206

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16188346 [Map]; Strand: c
      • AT3G44610.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT15206 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CATGAAAAGG 
    AGGACGAGTA CACATGAGCA ATGCCCAATT CACTCCTTGG AAAAATGGGT 
    GACGTTTCAC GGCTGTTGCA CCCAGAGATG ACCCTAACCG TCGGCTCGGG 
    TCCTTGGCAA GTAGCTGAGA GATCAGATCC TTGGCTGCGC TTGGAATCGT 
    TGGTTCTTTC GGGAATTCGA GGGCTCGAGC TACGATGTTG GCAAGAGTTA 
    ACTCGTGGTC CATTCCTTTA AACGGCGTTG TTCCGTAGAA CAGCTCGAAC 
    ATGAATATTC CTAATGTCCA CCAGTCCACT GCACTACCAT GTCCTTCTCC 
    TGCCATCCAC ATTTTAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16188345 [Map]; Strand: c
      • AT3G44610.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT15206 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCATGAAAAG 
    GAGGACGAGT ACACATGAGC AATGCCCAAT TCACTCCTTG GAAAAATGGG 
    TGACGTTTCA CGGCTGTTGC ACCCAGAGAT GACCCTAACC GTCGGCTCGG 
    GTCCTTGGGA AGTAGCTGAG AGATCAGATC CTTGGCTGCG CTTGGAATCG 
    TTGGTTCTTT CGGGAATTCG AGGGCTCGAG CTAGNATGTT GGCAAAAGTT 
    AACTCGTGGT CCATTCCTTT AAACGGCGTT GTTCCGTAGA ACAGCTCGAA 
    CATGAATATT CCTAATGTCC ACCAGTCCAC TGCACTACCA TGTCCTTCTC 
    CTGCCATCCA CATTTTACGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16188061 [Map]; Strand: c
      • AT3G44605.1 - [+] show detail - transposable element gene
        Distance: 7606; Region: intergenic
      • AT3G44610.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 68; Region: intergenic
    Flanking Genome Sequence: GT15206 - 5-prime edge 
    GTTTAGACAT TCTTTTTGTA AGTTCTTCAA AACTAGTATA ATTGAAGGAA 
    AATAACTTGG TAAATTATTA ATGTCAGCTG CAAAAAAAAA AAAAAAAATT 
    TTTTCGCCCC CCTGTTTTAA AATTTTGGGC CCCCCCCTTT TGGGGGGGGG 
    GCCCCC

AT3G44605.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.1e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT3G44610.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 2 (TAIR:AT5G47750.1); Has 99456 Blast hits to 74546 proteins in 2417 species: Archae - 35; Bacteria - 11117; Metazoa - 41933; Fungi - 12113; Plants - 14694; Viruses - 280; Other Eukaryotes - 19284 (source: NCBI BLink).
Link
InterPro Scan - TAIR