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GT15208

CSHL Arabidopsis genetrap mutant lines

Original: GT15208

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15208

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1063771 [Map]; Strand: c
      • AT2G03505.1 - [+] show detail - Carbohydrate-binding X8 domain superfamily protein
        Distance: -465; Region: promoter
    Flanking Genome Sequence: GT15208 - 3-prime edge 
    AAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAT 
    CGTGCACCAA CCACAAAGGA CTAGAGGACC AGGTCAGCAT TAACTCATAG 
    GTTATGCAAA AATTTCTATA ATTTGTCAAT TCCCAACTTT CATTTTCCTT 
    CGTACATTAT CAGATGAACA CTAAAACATA TTGATTTGCT TTTATTGAGT 
    CTACTACCAT TATGGTCTCA CGATGAAATC ACGACTATTA ATTGGTTCTG 
    CTTTTATTTT GACTAAGAAT AATTAAATTG TACCAAACGA TAAATGAAAT 
    AATTACAATT TTTAGCAACA AAAAAGAAAA AGAAAAAAAC AAATGTTGAG 
    ACCATATACA TTTTTGGAGT TTGGACACTG AGATTTTCAG ATTCTTGTCT 
    GTGGTTAAAC CTCGGAACCA GAGAGAGATG GTATGGTCTT TATCACTCTC 
    TTTTATTAAT AAACTCATAT CTCTCTCATC TAAAATCTCA TCTCTTCTTC 
    TTCTTCTTCT TCTTCTTCTT CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1063787 [Map]; Strand: c
      • AT2G03505.1 - [+] show detail - Carbohydrate-binding X8 domain superfamily protein
        Distance: -449; Region: promoter
    Flanking Genome Sequence: GT15208 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTATCGTGCA CCAACCACAA 
    AGGACTAGAG GACCAGGTCA GCATTAACTC ATAGGTTATG CAAAAATTTC 
    TATAATTTGT CAATTCCCAA CTTTCATTTT CCTTCGTACA TTATCAGATG 
    AACACTAAAA CATATTGATT TGCTTTTATT GAGTCTACTA CCATTATGGT 
    CTCACGATGA AATCACGACT ATTAATTGGT TCTGCTTTTA TTTTGACTAA 
    GAATAATTAA ATTGTACCAA ACGATAAATG AAATAATTAC AATTTTTAGC 
    AACAAAAAAG AAAAAGAAAA AAACAAATGT TGAGACCATA TACATTTTTG 
    GAGTTTGGAC ACTGAGATTT TCAGATTCTT GTCTGTGGTT AAACCTCGGA 
    ACCAGAGAGA GATGGTATGG TCTTTATCAC TCTCTTTTAT TAATAAACTC 
    ATATCTCTCT CATCTAAAAT CACATCTCTT CTTCTTCTTC TTCTTCTTCT 
    TCTTCTTCTT CT

AT2G03505.1

Model type
Protein coding
Short Description
Carbohydrate-binding X8 domain superfamily protein
Computational Description
Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT1G13830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR