1. Home
  2. Mutant Lines
  3. GT15209

GT15209

CSHL Arabidopsis genetrap mutant lines

Original: GT15209

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15209

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5061215 [Map]; Strand: w
      • AT2G12465.1 - [+] show detail - low-molecular-weight cysteine-rich 50
        Distance: -5343; Region: intergenic
      • AT2G12470.1 - [+] show detail - transposable element gene
        Distance: 1400; Region: intergenic
    Flanking Genome Sequence: GT15209 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTTTT 
    GGGTTATGGT TATAATGAAC TTTTCAGACG TGGTTAATGT GCTTCTTATA 
    TGAATGTCTC TCTACTCGTA ACCAGAGTTA TTACCTATCA AAGGAACACT 
    CAACAGAATG TGGGAGATTG ATAGCTATCA TACCGATAGA ATTTTTAGAT 
    GAAGTGGTTG CTACTAACGA CTGTACCAAT CTTCGCGTCG CTCTGACTAG 
    CAGAAAAGAG GCTCATTTAT GGCAGTTAGC TCAAGTAGAG CTCAATACTG 
    AAAACCAAGT CACCTATCGA TCGGAAAACC AACTTCGGGT GAGGGATATC 
    TCACAAGACA TTGTGGACTC TGGGTTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5708764 [Map]; Strand: w
      • AT2G13690.1 - [+] show detail - PRLI-interacting factor, putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15209 - 5-prime edge 
    GATTTAGCGC TTTGCCGTGA GAAAGGAACC AGTTTAGGTC TCTGCTGCTG 
    AGATTTAGCT GGAATGTGGT TACCAGATGA AATCGAACGA GCATCAGGAC 
    TCGCTGGAGG TACGGCGAAA GAGCAACACC ATGATCGTCG GCGAGATAGA 
    TGTCCGGTGC CGAAATTGGT AGGTTTACGG AGGTCAGAGT CGCCCATTGT 
    CATCAAGTGA GAGCTGGTGA AGTGAGTAAA GTTGTAGTCT AGAGAGATTA 
    CTGTTTTGTG TTGGCCTTTC TATTTCTGTT TCTTCTTTTT ATGCAAACTT 
    GCTTATTTCT TTTTAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5708716 [Map]; Strand: w
      • AT2G13690.1 - [+] show detail - PRLI-interacting factor, putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15209 - 5-prime edge 
    GGTGATAAGA TCCGACGCGG GTCGATCCGA TTTACGATGT TTAAAGCAGA 
    TTTAGAGCTT TGCGGTGAGC AAGGAACCAG TTTAGGTCTC TGCTGCTGAG 
    ATTTAGCTGG AATGTGGTTA CGAGATGAAA TCGAACGAGC ATCAGGACTC 
    GCTGGAGGTA CGGCGAAAGA GCAACACCAT GATCGTCGGC GAGATAGATG 
    TCCGGTGCCG AAATTGGTAG GTTTACGGAG GTCAGAGTCG CCCATTGTCA 
    TCAAGTGAGA GCTGGTGAAG TGAGTAAAGT TGTAGTCTAG AGAGATTACT 
    GTTTTGTGTT GGCTTTCTAT TTCTGTTTCT TCTTTTTATG CAAACTTGTT 
    TATTTCTTTT TACTTTCATC ATTGTTAAAT TTTAGATAAT GAAATCATAT 
    ATGGTTAATT GACACAATTC CCTAGATTCA TTTTTTGTGA ACATGTGTGG 
    ATACATTGCT GTCATGATTT AAAATTGAAT ACCAACCTAA TTCAATTTTT 
    CTTCAAAAAC ATTTTATTGT TTAAGTTTTA GTTCATAAAC ATCCTCTATT 
    TATTGAAAAA AGTTTTTTTT TTTATTGGCA AGCTAACAAA TTTCCAAAAT 
    TTATTAAAAA TTTTGTTCCA TTTTCTTT

AT2G12465.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 50
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 50 (LCR50); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT5G42232.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G12470.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-277 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT2G13690.1

Model type
Protein coding
Short Description
PRLI-interacting factor, putative
Computational Description
PRLI-interacting factor, putative; BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT5G60050.1); Has 259 Blast hits to 259 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR