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GT15213

CSHL Arabidopsis genetrap mutant lines

Original: GT15213

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15213

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20079491 [Map]; Strand: w
      • AT1G53785.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -489; Region: promoter
      • AT1G53790.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: intron3 (3UTR)
      • AT1G53790.2 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: intron4 (3UTR)
    Flanking Genome Sequence: GT15213 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCA CGTAGGACGA 
    CTAGCCAAGA ACCGATCAAG AAGCTGTTGT AAATGTTGTA CTCTGTTGAA 
    GATTTTCTCT GTTTCATTCT CACTCGACGA AGTTCCACAT AATCTTCATA 
    AGGCTATTTG TAAACCGTGA TGCTGCAAAG TTAGAAATAA ATACAAATGC 
    TTCATATATT TCAAACTTAG CTGCAGCTTC CAATTAATGC AAAGCAGGCT 
    GTTGATTAAA TATAAATCGA AAATTTTAAA ACTCTAACGA ATGTGCCCGT 
    AAAACCTCTT TGAAATTTCA GATCGGAAAT TGTTGATGAC CAGAATCGAA 
    TAAAAACGAT TTAATTTCTG TNCCTCTCGA CTACAAATCT GGTCTCGATT 
    ATTCAAGATT CATACATACA AAATATACAT TCTTTTGCCC CGCGTAAAAA 
    CAACCTTATA CTTTATGTAA GACAAAACAT ATGGGCCCAA GAAGGCCCAA 
    TAATAATCAT TTACATTGGT TCGTAAGTCA GTTTGATTTT TGTTTCCTCA 
    CCTCCCCGAT CGTCGGAGGA TGTAGAAGGT GGCGGCGGCG GCTCTCACCT 
    GCTTCATCGC AGTTTAGAAA TGACTAGAGG AGATCGACGT AGCTCCCCGA 
    GTTTCTTCTC CGGCTCGAAG CGGAGTTGGC TAGGGTTTCA CGGTGGCTCA 
    CGGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20079489 [Map]; Strand: w
      • AT1G53785.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -487; Region: promoter
      • AT1G53790.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: intron3 (3UTR)
      • AT1G53790.2 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: intron4 (3UTR)
    Flanking Genome Sequence: GT15213 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCA CGTAGGACGA 
    CAAGCCAAGA ACCGATCAAG AAGCTGTTGT AAATGTTGTA CTCTGTTGAA 
    GATTTTCTCT GTTTTCTTCT CGCTCGACGA AGTTCCACAT AATCTTCATA 
    AGGCTATTTG TAAACCGTGA TGCTGCAAAG TTAGAAATAA ATACAAATGC 
    TTCATATATT TCAAACTTAG CTGCAGCTTC CAATTAATGC AAAGCAGGCT 
    GTTGATTAAA TATAAATCGA AAATTTTAAA ACTCTAACGA ATGTGCCCGT 
    AAAACCTCTT TGAAATTTCA GATCGGAAAT TGTTGATGAC CAGAATCGAA 
    TAAAAACGAT TTAATTTCAT GTCTCTTGAG TACAAATCTG GTCTCGATTA 
    TTCAAGATTC ATACATACAA AATATACATT CTTTTGCCCG CGTAAAAACA 
    ACCTTATACT TTATGTAAGA CAAAACATAT GGGCCCAAGA AGGCCCAATA 
    ATAATCATTT ACATTGGTTC GTAAGTCAGT TTGATTTTTG TTTCCTCACC 
    TCCCCGATCG TCGGAGGATG TAGAAGGTGG CGGCGGCGGC TCTCACCTGC 
    TTCATCGCAG TTTAGAAATG ACTAGAGGAG ATCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1006360 [Map]; Strand: w
      • AT3G03910.1 - [+] show detail - glutamate dehydrogenase 3
        Distance: -482; Region: promoter
    Flanking Genome Sequence: GT15213 - 5-prime edge 
    CCGTGAGAAT ATTTTGCAGC TACAAAGAAT TCCATACCCG AGAAAGGAGA 
    GCAAGAGCCA AGAAAGGCGC ATTAAGACTA ACATTGACTC CCGGCAGGAG 
    AGAACCAACT CGGGTCCCAG CCTCAATGCC GTAGGTTCTC TCCTCCAGAT 
    TCCAACTGGC CATTAAAGGG GCCATATAGT CATCCGATGG TTCGGAAATG 
    GTAGCGCAAC TCAGGCAGCT AAAAGCGGAA AGTCGATCAG TAGCTTACCT 
    TTTCATTAAT GAATATTCCA TTATTCTGAT CTAGTTTATA CACATGGTGA 
    AGACATGGGC TATTTCTATA ATCTATATAT TTATTTGTGT GAGAACTTTG 
    CTAAACAGAC ACATAGTATT CTGAATACTC AAAATCAGGA TCAATTATGG 
    GTATCATCTT ATATGATTAT TCATATTCCT TATATAAATT ATCTTTTATT 
    ATAAATATAA ATAACAAAAT TTTCATTCTC ATATTCCATA ACACGAAGTG 
    TGTACGTATC ACTCTATATA AATAAACTTG CAATAACATA AGCAAGACTC 
    ACATTTTTCC ACT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15213 - 5-prime edge 
    ACCGACCGAT TTCATCCCTA GTACACTTGA TTCTTCACAA ATTGGGTTCT 
    GTTATGTTGG TTTGGCTTGA TTTCGTTACT TGGGTTGAAA TATACTTAAC 
    CAATAATCTA ACTTCGGTGG TTTAAACAAT TTCCGGTATG GCTGGCTATA 
    TGCGCATTAT TATTTTTAAT TGTTACTGAA CCAATAATCT AATTTACTAT 
    GGCTAGAAGC ATATTTGTAT TAT

AT1G53785.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53790.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1824 Blast hits to 1754 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 137; Plants - 1479; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53790.2

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; FUNCTIONS IN: endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, alpha-subunit complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03910.1

Model type
Protein coding
Short Description
glutamate dehydrogenase 3
Curator Summary
GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development.
Computational Description
glutamate dehydrogenase 3 (GDH3); FUNCTIONS IN: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen compound metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding domain (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: glutamate dehydrogenase 1 (TAIR:AT5G18170.1); Has 8937 Blast hits to 8931 proteins in 2306 species: Archae - 305; Bacteria - 5351; Metazoa - 356; Fungi - 208; Plants - 399; Viruses - 0; Other Eukaryotes - 2318 (source: NCBI BLink).
Link
InterPro Scan - TAIR