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Mutant Lines
GT15216

GT15216

CSHL Arabidopsis genetrap mutant lines

Original: GT15216

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15216

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 19399562 [Map]; Strand: c
- AT2G47240.2 - [+] show detail - AMP-dependent synthetase and ligase family protein
  Distance: 1731; Region: intergenic
- AT2G47250.1 - [+] show detail - RNA helicase family protein
  Distance: 132; Region: intergenic

AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGGT 
GGGTTTGGGA TGGCTGCAGA AAAGGAATTA TTCATGTATG GTGGATCTCT 
TTAGGAAGGG CTGGTCAATT AGTGTTCTTT AGATGAGGAG ATTGATCACG 
AGGACCAGAG CGAAGAGCAA GACGCTATCA GCTGGACTGA AGCTCATACT 
TGAGATTATC AGAAACATTG TTATATAGAG TTGCCAAACA GAGGTTTTAA 
AAGAACACAC TTTGAGTAAT GCAAGATTCT TTCATTGAAC ATAAACAAAG 
CAAAGTATCC ATCATAATTT AAGACGAGGG TAAATCATAG TGGTCTTGTG 
ACTAAGACAT TCTTCTCTGA GTGATTTGAT CCTCTAGTCG AAGCAAAGAG 
AGTGATTTTC TTCACTTCCG GTTCTTGCTC TC

3 prime edge [+] show sequence

Chromosome: 2; Position: 19399566 [Map]; Strand: c
- AT2G47240.2 - [+] show detail - AMP-dependent synthetase and ligase family protein
  Distance: 1735; Region: intergenic
- AT2G47250.1 - [+] show detail - RNA helicase family protein
  Distance: 128; Region: intergenic

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGTGGGA 
TTGGGATGGC TGCAGAAAAG GAATTATTCA TGTATGGTGG ATCTGCTTTA 
GGAAGGGCTG GTCAATTAGT GCTCTCTAGA TGAGGAGATT GATCACGAGG 
ACCAGAGCGA AGAGCAAGAC GCTATCAGCT GGACTGAAGC TCATACTTGA 
GATTATCAGA AACATTGTTA TATAGAGTTG CCAAACAGAG GTTTTAAAAG 
AACACACTTT GAGTAATGCA AGATTCTTTC ATTGAACATA AACAAAGCAA 
AGTATCCATC ATAATTTAAG ACGAGGGTAA ATCATAGTGG TCTTGTGACT 
AAGACATTCN TTCTCTGAGT GATTTGATCC TCTAGTCGAA GCAAAGAGAG 
TGATTTTCTT CACTTCCGGT TCTTGCTCTC GT

AT2G47240.2

Model type: Protein coding
Short Description: AMP-dependent synthetase and ligase family protein
Curator Summary: Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis
Computational Description: LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47250.1

Model type: Protein coding
Short Description: RNA helicase family protein
Computational Description: RNA helicase family protein; FUNCTIONS IN: in 7 functions; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT3G62310.1); Has 10530 Blast hits to 9574 proteins in 1628 species: Archae - 0; Bacteria - 3453; Metazoa - 2465; Fungi - 1286; Plants - 884; Viruses - 707; Other Eukaryotes - 1735 (source: NCBI BLink).
Link: InterPro Scan - TAIR