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GT15220

CSHL Arabidopsis genetrap mutant lines

Original: GT15220

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15220

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5024 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 3-prime edge
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCA TGCGAGAGGG 
    TCAAGCTCAA GATGGCAGCC TTTGTCTCCA AAAGATTCTG AAAATTTTCA
    GTAAGTGGTT TTCTTTAGTA GACACACTGG AATCTATCTC ATTAATTTGT
    TCAATTTCCC TGATGATGTT TTCAGGCCCT TTTTCAACCC TCGTAAACCA
    ATCTCTTTGT CAAATCTTGG TGAAATTCCT CTTTCAAGGT TAATCCTTCA
    CTCGACCAAG CTTTTTATGA AACACTCTTT ACCGCACTTT GCTAATCTAT
    ACCCTGTCAT CTCTAATTAT GTCCTTCAGT GAATTTGATA TCGCTGCGTA
    CGTTGTATAT GTTGGAAATG CATACACGGA TGTTCTACAA AAGAAGCAGT
    GGGTGTTTGT GACAGATGGA TCCGCACAAC ATTCAGGGGA AATCTCAAAC
    AGTCTTCTTG CTATAAGCTT CAGCACCTCA TTCATGGATG ATAGCTCTGT
    TTCCCACATC AGCCATAATT TGGTTGGATC CGTGGTATGT ACAAATTCTA
    ATCTTTGTCT AGTTTTACAC AGAGAGAATA TGCACCAAGA GATTAAATTT
    TGAAAAATAT ATGCTTGTTA TGGGTCTTAA TTTTTGGCAG GTCGGATTTT
    GCAATCTAAT TAAAAGAGCA AAGGATGTGA CAAACGAAAT TTGGGTTGCT
    GAGGC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5029 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCATGCGA 
    AAGGGTCAAG CTCAAGATGG CAGCCTGTTG TCTCCAAAAG ATTCTGAAAA
    TTTTCAGATA AGTCGGTTTT CTTTACTAGA CACACTAGAA TCTATCTCAT
    TAATTTGTTC AATTTCCCTG ATGATGTTTT CAGGCCCTTT TTCAACCCTC
    GTAAACCAAT CTCTTTGTCA AATCTTGGTG AAATTCCTCT TTCAAGGTTA
    ATCTCAGTAG TCCAAGCTTT TTATGAAACA CTCTTTACCG CACTTTGCTA
    ATCTATACCC TGTCATCTCT AATTATGTCC TTCAGTGAAT TTGATATCGC
    TGCGTACGTT GTATATGTTG GAAATGCATA CACGGATGTT CTACAAAAGA
    AGCAGTGGGT GTTTGTGACA GATGGATCCG CACAACATTC AGGGGAAATC
    TCAAACAGTC TTCTTGCTAT AAGCTTCAGC ACCTCATTCA TGGATGATAG
    CTCTGTTTCC CACATTGGCC ATAATTTGGT TGGATCCGTG GTATGTACAA
    ATTCTAATCT TTGTCTAGTT TTACACAGAG AGAATATGCA CCAAGAGATT
    AAATTTTG
  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15220 - 3-prime edge
    GTAGAGTATT TTACCGACCG TTACCGACCG TTTTCATCCA TGCGAGAGGG 
    TCAAGCTCAA GATGGCAG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5087 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 5-prime edge
    CCTACTTTCT CCCTGCTCGC ATGTAAGTAA AGTATTTCTG AATCTGAGTT 
    TATTGGTACT AGCCCTTTCA TCATGTATAT TTTCCCCTCT GTCAGCTCGG
    TTCTCTGTCA CAGTAGTAGA CA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5087 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 5-prime edge
    CCTACTTTCT CCCTGCTCGC ATGTAAGTAA AGTATTTCTG AATCTGAGTT 
    TATTGGTACT AGCCCTTTCA TCATGTATAT TTTCCCCTCT GTCAGCTCGG
    TTCTCTGTCA CAGTAGTAGA CAATGATAAC TGTTTTAAGA ATCTACAAGA
    AAAAAGTTGA ACAAGCTAAT CGATGATGCT CTTAATGCAA CAGTACAGTG
    ATGGTAACGA TTCTTTGATA TGCATTTCAG TCCATTCGAG GTCCACAGCA
    ACTCTGAAAA GCTTATATTT GGAACTCCCC GTTCCATATA AGCTCATATG
    GATAAGGTCC GTGTAAACTT ATTAGCCATT AGAAAAATGC CTTATTTTAA
    ATTGTGCATG AAACATTCAG ATTTAGGCAT TTGAATGTAC CTGTCTCTCC
    GTGGGATCCC AGATTGTTAC AATGCCTTCT TTTGGATTGT GCTCTCCTTC
    ATAACTTAAG CTCGTCAGGC CAACAAGCCT AATCCTCATG AACGGGGTGA
    CGTTCCTTTC ACCTAAACCA GCGTCTTCCA GAGTTTCTGC CACTGATTTT
    TCCTTCCGCA TTTGCTGGGC TGCCTGAGGT TCAGATTGAA GCAGTTAATT
    ACTGTAATCA ATATATCAAG AAAAGGAAAT TACTATTCTA CCTCAAATTT
    TGCTTTATAT GTAGTGAAAG ATCTCAACTG CTCTGGGCTC ATTTCTGCCA
    TAAGAAATTC AGGTTCAGCA GCCGTCTCTA CAGCTTAAAG ATCTTGG

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR