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GT15220

CSHL Arabidopsis genetrap mutant lines

Original: GT15220

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15220

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5024 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCA TGCGAGAGGG 
    TCAAGCTCAA GATGGCAGCC TTTGTCTCCA AAAGATTCTG AAAATTTTCA 
    GTAAGTGGTT TTCTTTAGTA GACACACTGG AATCTATCTC ATTAATTTGT 
    TCAATTTCCC TGATGATGTT TTCAGGCCCT TTTTCAACCC TCGTAAACCA 
    ATCTCTTTGT CAAATCTTGG TGAAATTCCT CTTTCAAGGT TAATCCTTCA 
    CTCGACCAAG CTTTTTATGA AACACTCTTT ACCGCACTTT GCTAATCTAT 
    ACCCTGTCAT CTCTAATTAT GTCCTTCAGT GAATTTGATA TCGCTGCGTA 
    CGTTGTATAT GTTGGAAATG CATACACGGA TGTTCTACAA AAGAAGCAGT 
    GGGTGTTTGT GACAGATGGA TCCGCACAAC ATTCAGGGGA AATCTCAAAC 
    AGTCTTCTTG CTATAAGCTT CAGCACCTCA TTCATGGATG ATAGCTCTGT 
    TTCCCACATC AGCCATAATT TGGTTGGATC CGTGGTATGT ACAAATTCTA 
    ATCTTTGTCT AGTTTTACAC AGAGAGAATA TGCACCAAGA GATTAAATTT 
    TGAAAAATAT ATGCTTGTTA TGGGTCTTAA TTTTTGGCAG GTCGGATTTT 
    GCAATCTAAT TAAAAGAGCA AAGGATGTGA CAAACGAAAT TTGGGTTGCT 
    GAGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5029 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCATGCGA 
    AAGGGTCAAG CTCAAGATGG CAGCCTGTTG TCTCCAAAAG ATTCTGAAAA 
    TTTTCAGATA AGTCGGTTTT CTTTACTAGA CACACTAGAA TCTATCTCAT 
    TAATTTGTTC AATTTCCCTG ATGATGTTTT CAGGCCCTTT TTCAACCCTC 
    GTAAACCAAT CTCTTTGTCA AATCTTGGTG AAATTCCTCT TTCAAGGTTA 
    ATCTCAGTAG TCCAAGCTTT TTATGAAACA CTCTTTACCG CACTTTGCTA 
    ATCTATACCC TGTCATCTCT AATTATGTCC TTCAGTGAAT TTGATATCGC 
    TGCGTACGTT GTATATGTTG GAAATGCATA CACGGATGTT CTACAAAAGA 
    AGCAGTGGGT GTTTGTGACA GATGGATCCG CACAACATTC AGGGGAAATC 
    TCAAACAGTC TTCTTGCTAT AAGCTTCAGC ACCTCATTCA TGGATGATAG 
    CTCTGTTTCC CACATTGGCC ATAATTTGGT TGGATCCGTG GTATGTACAA 
    ATTCTAATCT TTGTCTAGTT TTACACAGAG AGAATATGCA CCAAGAGATT 
    AAATTTTG

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15220 - 3-prime edge 
    GTAGAGTATT TTACCGACCG TTACCGACCG TTTTCATCCA TGCGAGAGGG 
    TCAAGCTCAA GATGGCAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5087 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 5-prime edge 
    CCTACTTTCT CCCTGCTCGC ATGTAAGTAA AGTATTTCTG AATCTGAGTT 
    TATTGGTACT AGCCCTTTCA TCATGTATAT TTTCCCCTCT GTCAGCTCGG 
    TTCTCTGTCA CAGTAGTAGA CA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5087 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT15220 - 5-prime edge 
    CCTACTTTCT CCCTGCTCGC ATGTAAGTAA AGTATTTCTG AATCTGAGTT 
    TATTGGTACT AGCCCTTTCA TCATGTATAT TTTCCCCTCT GTCAGCTCGG 
    TTCTCTGTCA CAGTAGTAGA CAATGATAAC TGTTTTAAGA ATCTACAAGA 
    AAAAAGTTGA ACAAGCTAAT CGATGATGCT CTTAATGCAA CAGTACAGTG 
    ATGGTAACGA TTCTTTGATA TGCATTTCAG TCCATTCGAG GTCCACAGCA 
    ACTCTGAAAA GCTTATATTT GGAACTCCCC GTTCCATATA AGCTCATATG 
    GATAAGGTCC GTGTAAACTT ATTAGCCATT AGAAAAATGC CTTATTTTAA 
    ATTGTGCATG AAACATTCAG ATTTAGGCAT TTGAATGTAC CTGTCTCTCC 
    GTGGGATCCC AGATTGTTAC AATGCCTTCT TTTGGATTGT GCTCTCCTTC 
    ATAACTTAAG CTCGTCAGGC CAACAAGCCT AATCCTCATG AACGGGGTGA 
    CGTTCCTTTC ACCTAAACCA GCGTCTTCCA GAGTTTCTGC CACTGATTTT 
    TCCTTCCGCA TTTGCTGGGC TGCCTGAGGT TCAGATTGAA GCAGTTAATT 
    ACTGTAATCA ATATATCAAG AAAAGGAAAT TACTATTCTA CCTCAAATTT 
    TGCTTTATAT GTAGTGAAAG ATCTCAACTG CTCTGGGCTC ATTTCTGCCA 
    TAAGAAATTC AGGTTCAGCA GCCGTCTCTA CAGCTTAAAG ATCTTGG

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR