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Mutant Lines
GT15221

GT15221

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT15221

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 26379165 [Map]; Strand: w
  - AT5G65940.1 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
    Distance: 0; Region: exon1 (5UTR)
  - AT5G65940.2 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
    Distance: 0; Region: exon1 (5UTR)
  - AT5G65940.3 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
    Distance: 0; Region: exon1 (5UTR)
  - AT5G65950.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -958; Region: promoter
Flanking Genome Sequence: GT15221 - 3-prime edge
```
AACGGTAGAG GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAAGTA 
AGAAAGATGG CAGTCGAGAT GGCCTCTCAG TCTCAGGTCT CTTTCTTGCT 
TCTTTAATCC GAATCTACGA CGATCAATTC ATCTCT
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 12441561 [Map]; Strand: c
- AT1G34160.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

TCCGGCGAAT CCGCGGATGA TTGCGTTCCA ATCATTGGTT AAAGGTTTAG 
GGATGTACCG GAAAATTTGT ACGGCGAAGG AAAGGTCTCC GAATGGTGAG 
ATTGCGCAGC CTTCGAGAAG ACGAGAACGG AGAAAGGAAG ATTGGAAATG 
GCCGGCGGTG AGGAAGTGAG ATTGGAGTTG TTTGATTTGG GAGAAGCTGA 
CGCATTTTTG TATCATCGTC TCCATGTAAA CACGAGCCAT TCCATTGCCG 
GGGCTGCACC AAATTAAACC GGGCTCACGA ATCAGTTGGT ATAAGGGATT 
GCTTGATCGG TTTTCTTTTT TTAAAACCGA AATCAAACCA AAAATGAATC 
AGTTTTCATG GCCATTCA

AT1G34160.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 36841 Blast hits to 13999 proteins in 256 species: Archae - 0; Bacteria - 8; Metazoa - 78; Fungi - 94; Plants - 36058; Viruses - 0; Other Eukaryotes - 603 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65940.1

Model type: Protein coding
Short Description: beta-hydroxyisobutyryl-CoA hydrolase 1
Curator Summary: hydrolyzes beta-hydroxyisobutyryl-CoA
Computational Description: beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT2G30660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65940.2

Model type: Protein coding
Short Description: beta-hydroxyisobutyryl-CoA hydrolase 1
Curator Summary: hydrolyzes beta-hydroxyisobutyryl-CoA
Computational Description: beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT2G30660.1); Has 31717 Blast hits to 31706 proteins in 2246 species: Archae - 411; Bacteria - 21637; Metazoa - 1269; Fungi - 836; Plants - 624; Viruses - 0; Other Eukaryotes - 6940 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65940.3

Model type: Protein coding
Short Description: beta-hydroxyisobutyryl-CoA hydrolase 1
Curator Summary: hydrolyzes beta-hydroxyisobutyryl-CoA
Computational Description: beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT2G30660.1); Has 31609 Blast hits to 31599 proteins in 2217 species: Archae - 411; Bacteria - 21537; Metazoa - 1271; Fungi - 809; Plants - 626; Viruses - 0; Other Eukaryotes - 6955 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65950.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR