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GT15222

CSHL Arabidopsis genetrap mutant lines

Original: GT15222

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15222

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26379166 [Map]; Strand: w
      • AT5G65940.1 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65940.2 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65940.3 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65950.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -957; Region: promoter
    Flanking Genome Sequence: GT15222 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAGT 
    AAGAAAGATG GCAGTCGAGA TGGCCTCTCA GTCTCAGGTC TCTTTCTTGC 
    TTCTTTAATC CGAATCTACG ACGATCAATT CTTCTCTCTC GACAATAATA 
    ATATGATCAC AGGTTTTGGT GGAAGAGAAA TCGAGTGTTA GAATCTTGAC 
    ACTAAACAGA CCAAAGCAGC TGAATGCTCT GTCCTTCCAC ATGGTATCGA 
    ATATTTCCCT TCTTGTACAT GCGTACTGTA TTGTCTTAGA CTCATTTTTT 
    TCTGTAGATC TCTCGATTGC TGCAACTGTT CCTTGCATTT GAGGAGGACC 
    CTAGTGTGAA ACTTGTCATC CTAAAGGTAA TCATATCCTT ATCTCTTCCG 
    CTTACACACA TTTAGTACTG AATAACTTTG CCACAGGGTC ATGGGAGAGC 
    CTTTTGTGCT GGTGGCGATG TTGCAGCTGT TGTTCGTGAC ATCAATCAAG 
    GTTTACCACC CATTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26379215 [Map]; Strand: w
      • AT5G65940.1 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65940.2 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65940.3 - [+] show detail - beta-hydroxyisobutyryl-CoA hydrolase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65950.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -908; Region: promoter
    Flanking Genome Sequence: GT15222 - 5-prime edge 
    TCCATCCTAC TTTCTCCCTG TTCTTACTGG TCAGATTCGC CTTTCTATCT 
    CCGGAGAGAG GAGCAGCAAT GGGATCAGAA ATTACCACTA ATGGCTAACA 
    AAATCTTCAC CCGCTTAGTT TAGGAAGTTG ATATTGGGCT TATAGTAATC 
    TGTTGGTTTT AATAATGGGC TTTATTTTGT TAATAGAGCA AATGGAACTT 
    TGCTTTTCAA ACTCAATTTC AAAGCCCTCT TGCAACATGC TTGATGAATG 
    AGAAGATTAT ATGTTTTTAT CGAGTACGTT AGACATGTGT TTTTTTTGTT 
    AGGAAGCTAG TTTTCCAACT AACCAACACC TCCCTCTAGC ATAAAATGAC 
    ACGTGGGCAC CAGATCAATC ATTAAAAAAG TCTTCAAAAA TTCTCAACAA 
    CCAACTTCTA AAAGTCAGAC ATGAAAGCCC TCGCCTCTCG ATATATAGAT 
    AATTTGCATA TACATGAAAA CTCAACAATC TGACGCATAT GCAAACAGAG 
    TTTGAAAGAT GGGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16838925 [Map]; Strand: w
      • AT4G35440.1 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35440.2 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35450.5 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -607; Region: promoter
      • AT4G35450.1 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -620; Region: promoter
      • AT4G35450.3 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -744; Region: promoter
      • AT4G35450.2 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -762; Region: promoter
    Flanking Genome Sequence: GT15222 - 5-prime edge 
    TACTTTCTCC CTGGCTAGAA TAGAATCTCC AGTAGATTTT CCAGCAGATT 
    CTCGAAGCTG ATTGAGGATG CTCACCACCA AACCGCCGAT AGTCGGAACA 
    AGGATAACAC GCAACCAATT GGAACCGATC GGTGCCTCTC TAAGCCACGA 
    AGCTCCACGA TCAGGAATCC CATCCCAGGA AAAGTCTCGA AGCAAGTGAA 
    CACAGTTGTT GAATAGAACC ACACTAACTC CAGTGAGAAC ACCAACCAAA 
    CAAGCCGACG CTATCGCAAG CTCCTGAGAC GGCTGCTGAT CAAATCCAAC 
    CTCATCCTGA TCAGTCTCCT GCTTCGCCGC CGGTAAACGC GGGAAAATTC 
    TACCGCCAAT AGCGACGGAA CCGAAAAACG GTGAAAGGAC GACTTTGAAC 
    TGAAAAGGAA CCTCGGTTTT GTGAATTGGA GCGAATCTCC CGGAAGAGAC 
    GGGAGATCGG AGGGCAGCA

AT4G35440.1

Model type
Protein coding
Short Description
chloride channel E
Curator Summary
Enclodes a choride channel protein that is localized to the thlakoid membrane.
Computational Description
chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35440.2

Model type
Protein coding
Short Description
chloride channel E
Curator Summary
Enclodes a choride channel protein that is localized to the thlakoid membrane.
Computational Description
chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2).
Link
InterPro Scan - TAIR

AT4G35450.1

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.2

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.3

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.5

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1).
Link
InterPro Scan - TAIR

AT5G65940.1

Model type
Protein coding
Short Description
beta-hydroxyisobutyryl-CoA hydrolase 1
Curator Summary
hydrolyzes beta-hydroxyisobutyryl-CoA
Computational Description
beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT2G30660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65940.2

Model type
Protein coding
Short Description
beta-hydroxyisobutyryl-CoA hydrolase 1
Curator Summary
hydrolyzes beta-hydroxyisobutyryl-CoA
Computational Description
beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT2G30660.1); Has 31717 Blast hits to 31706 proteins in 2246 species: Archae - 411; Bacteria - 21637; Metazoa - 1269; Fungi - 836; Plants - 624; Viruses - 0; Other Eukaryotes - 6940 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65940.3

Model type
Protein coding
Short Description
beta-hydroxyisobutyryl-CoA hydrolase 1
Curator Summary
hydrolyzes beta-hydroxyisobutyryl-CoA
Computational Description
beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT2G30660.1); Has 31609 Blast hits to 31599 proteins in 2217 species: Archae - 411; Bacteria - 21537; Metazoa - 1271; Fungi - 809; Plants - 626; Viruses - 0; Other Eukaryotes - 6955 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65950.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR