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GT15224

CSHL Arabidopsis genetrap mutant lines

Original: GT15224

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15224

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19560712 [Map]; Strand: c
      • AT2G47740.1 - [+] show detail - pre-tRNA
        Distance: -787; Region: promoter
      • AT2G47750.1 - [+] show detail - putative indole-3-acetic acid-amido synthetase GH3.9
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15224 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAACGTT 
    ATGCTCCTGT GTAGATCTTC TTCGTTGGTT TTGTCTAAGT CGATGCTTAG 
    AACCACGTTT CTCCTGCAGA TAAACCGGAA CTGTGGTGCT TCGTTGTAGA 
    AACCCGCCAC TTGAAAGAAC GTCGCCGATT CGGTAACGGT ACAATCCTGC 
    TTGCGCATGA ATCAATCATC AACCAATCCA AAACACTAAT TAAAAGAACG 
    TTTCTTTAAA TACCTGCGAA AGTTGTGACG ACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19560656 [Map]; Strand: c
      • AT2G47740.1 - [+] show detail - pre-tRNA
        Distance: -731; Region: promoter
      • AT2G47750.1 - [+] show detail - putative indole-3-acetic acid-amido synthetase GH3.9
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15224 - 5-prime edge 
    CCTACTTTCT CCCTGCATAA CGTTAGCCAA GAAGAAGCTT GGAAGCAACG 
    CATTCCTGGC GGAGTACACG AGCTACGCGG ACACGTCATC AGTGCCAGGT 
    CACTACGTGC TATTCTGGGA GATCCAAGGT CATCTCGAGC CGAAACTGAT 
    GGAAGAGTGT TGCGTTGCGG TGGAGGAAGA GCTGGACTAC ATATACAGAC 
    AGTGCAGGAC GAAAGAGAGA TCGATAGGGG CATTAGAGAT CAGAGTGGTG 
    AAACCAGGAA CGTTCGAGAA ACTGATGGAT CTGATTATAA GCCAAGGAGG 
    GTCGTTTAAT CAGTATAAAA CGCCGAGATG TGTCAAGTCC AACAGTGCAA 
    CGTTCAAGCT CTTGAACGGA CACGTAATGG CTTCTTTCTT TAGCCCTCGT 
    GACCCGACTT GGGTTCCATG ATCCCAAGAC TTTTAATCAT CATTACCAAA 
    TTTTTACACT CTCTGTAATA ATAACCATCC GATCGAATTC GCTGTTTTTT 
    TTTTTTTTTT TTTTCCCCCC TTTTTTTAAA AAAACGGGGG GGGGTTTGCA 
    AAAAACCCTT TTTGGGAAAA AAAAAAAAAA AAAAACCCCC CCAAACGGGG 
    TAAAAAAAAA AAAACCCCCT TGTTTGTGTA AAAAAAACCC CAACCTCTTT 
    TTTTTTTTAA AAAAAA

AT2G47740.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: CCC)
Link
InterPro Scan - TAIR

AT2G47750.1

Model type
Protein coding
Short Description
putative indole-3-acetic acid-amido synthetase GH3.9
Curator Summary
Encodes GH3.9, a member of the GH3 family auxin-responsive genes. gh3.9-1 mutants had greater primary root length, increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition, but no obvious effects on apical dominance or leaf morphology.
Computational Description
putative indole-3-acetic acid-amido synthetase GH3.9 (GH3.9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: chloroplast envelope; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G28130.1); Has 1429 Blast hits to 1301 proteins in 228 species: Archae - 0; Bacteria - 485; Metazoa - 53; Fungi - 2; Plants - 681; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Link
InterPro Scan - TAIR