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GT15226

CSHL Arabidopsis genetrap mutant lines

Original: GT15226

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15226

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490640 [Map]; Strand: w
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15226 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGAGCTC TGCTGTTTTG 
    TCTGCAAATA AAAACACAGA CCCTAAACCG AATTCTGTTA CTAAACCGGA 
    CGATTTTGCT GCACCAGAAT CTGTTACTAA ACCGGACGAT TTTGCTGAAC 
    CAGAATCTGT TACTAAACCG GACGATTTTG CTGAACCAGA ATCTGTTACT 
    AAACCGGACG ATTTTGCTGA ACCAGAATCT GTTACTAAAC CGGACGATTT 
    CGCTGAACCA GATTCTGTTA TTAAACCGGA CGATTTCACT GAATCAAATT 
    CTGCTCTTCA AACCGACTCT GTTTTCGAAC CAGACTCTGA TTCCGACGTG 
    GCACCTGCTT CTATTGCTTC CGATTTACAA AATTCACGAG TTGATTCATC 
    TGATTCATCG ACGCCGGATA AGAATCTTGC TTCTGGTGAT ACTTTGGCTC 
    AAATTGATGA TTCTCCTGAT ATTGTCTCAA CTCCTAATCG TAATAATCAG 
    CCATTGTTCG TTGTTGACAG TCCGTTTGTT GAAGCTACGT CTCCTCGTCA 
    AAGAAAGCGT CAGATTAGAC AGTCGGTTCG TCTGCAGGAT TACGTTCTTT 
    ACAATGCAAC AGTCTCTCCA ATAAACCCCC ACGCTCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490676 [Map]; Strand: w
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15226 - 5-prime edge 
    TCCTACTTTC TCCAGCTCCC CCTGTCTAGA GTGGTCGTGG AGACCATCCA 
    ATCTTCATCA ACAATGAGAG GAGCCGGAGA CGCAGACACA TGATCAGTGT 
    TTGTAGCTGC GTAAGGAAAA ACATCTTCCC TAAAAACAAC ATCACGAGAA 
    ATAAGAAATT CCTTCATCTC ACTCGA

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR