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GT15227

CSHL Arabidopsis genetrap mutant lines

Original: GT15227

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15227

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490654 [Map]; Strand: w
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15227 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    GTTAGGTTCA TCTCACTCGA CAAAAAAACA CAGACCCTAA ACCGAATTCT 
    GTTACTAAAC CGGACGATTT TGCTGCACCA GAATCTGTTA CTAAACCGGA 
    CGATTTTGCT GAACCAGAAT CTGTTACTAA ACCGGACGAT TTTGCTGAAC 
    CAGAATCTGT TACTAAACCG GACGATTTTG CTGAACCAGA ATCTGTTACT 
    AAACCGGACG ATTTCGCTGA ACCAGATTCT GTTATTAAAC CGGACGATTT 
    CACTGAATCA AATTCTGCTC TTCAAACCGA CTCTGTTTTC GAACCAGACT 
    CTGATTCCGA CGTGGCACCT GCTTCTATTG CTTCCGATTT ACAAAATTCA 
    CGAGTTGATT CATCTGATTC ATCGACGCCG GATAAGAATC TTGCTTCTGG 
    TGATACTTTG GCTCAAATTG ATGATTCTCC TGATATTGTC TCAACTCCTA 
    ATCGTAATAA TCAGCCATTG TTCGTTGTTG ACAGTCCGTT TGTTGAAGCT 
    ACGTCTCCTC GTCAAAGAAA GCGTCAGATT AGACAGTCGG TTCGTCTGCA 
    GGATTACGTT CTTTACAATG CAACAGTCTC TCCAATAAAC CCCCACGCTC 
    TTCCCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9889905 [Map]; Strand: w
      • AT5G27882.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15227 - 5-prime edge 
    GCCATATCAT GAAGTTGTTA TCCATGAGTT TGGTAAAGTT TGTCATATTG 
    ACATTCAAGA GATGAACAGA ATCAGAGGTG ACAATGGTCT GAGAGAAGGT 
    GGCTGGAGAA GAGGCCACGG GAATTGTAAA AAAATATAAA GGGGTCGGCT 
    ACTGTTTTAG GTTAGAGATC GACAGATCGT ATTAAAGTTT AAAGAGATTT 
    TGTTATATCA CTGGGATGAG AATTTTACAA TATATAAAGA TATTAGACAA 
    GGGAACTAGA GACTAACTGA AACAACCCGA CCAGTTTTTT TTTTAAAACA 
    TAATTAAATA TTCCTCATAA ATATTTAAT

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT5G27882.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.5e-36 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR