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GT15229

CSHL Arabidopsis genetrap mutant lines

Original: GT15229

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15229

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15229 - 3-prime edge 
    GTTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATGTAG ACGTATTTTG 
    GTATGTTGGC GGTGGTGGAG ACTTGTAAAC ATAAGTCGGG GTAGGAGGAG 
    GCGGAGACTT GTAGACATAG GTTGGAGTAG GAGGAGGCGG AGACTTGTAG 
    ACGTATGTTG GAGTTGGCGG TGGTGGGGAC TTGTAAACAT ATGTTGGAGT 
    TGGCGGTGGC GGAGACTTGT AGACATAAGT CGGGGTTGGT GGTGGAGGAG 
    ACTTGTATAC GTATGTGGGA GTGGGAGGAG GAGGTGACTT GTAGACATAA 
    GTTGGGGTTG GAGGAGGAGG CGACTTGTAG ACATAAGTCG GAGTTGGCGG 
    TGGTGGAGAT TTGTAGACAT AGGTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17945927 [Map]; Strand: w
      • AT2G43150.1 - [+] show detail - Proline-rich extensin-like family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15229 - 5-prime edge 
    GTCCCCGCCT CCTCCTACCC CGACTTATGT TTACAAGTCT CCACCACCGC 
    CAACTCCAAA ATATGTCTAC AAGTCCCCGC CTCCTCCTAC TCCGACCTAT 
    GTCTACAAGT CTCCCCCACC ACCTACTCCT ACTTATGTAT ACAAGTCTCC 
    TCCGCCACCA ACTCCGACAT ATGTCTACAA GTCCCCGCCT CCTCCTACCC 
    CGACTTATGT TTACAAGTCA CCACCACCTC CAACACACAC TCCTACACCG 
    TACTATTATC ACTCTCCTCC CCCACCGGTG AAATCCCCAC CGCCACCGTA 
    CTATTATCAC TCTCCTCCCC CACCGGTGAA GTCCCCACCG CCACCATACT 
    ATTATCACTC TCCTCCCCCA CCGGTGAAAT CCCCACCGCC ACCGTACTAC 
    TACCATTCAC CTCCTCCTCC GGTGAAATCC CCACCACCAC CTTACTACTA 
    CCATTCACCT CCTCCTCCGG TGAAATCCCC ACCACCACCT TACTACTACC 
    ATTCACCTCC CCCACCGGTG AAATCCCCAC CCACCACCGT ACTACTACCA 
    TTCACCTCCC CCGCCGGTGA AATCCCCACC ACCACCATAC TACTACCATT 
    C

AT2G43150.1

Model type
Protein coding
Short Description
Proline-rich extensin-like family protein
Computational Description
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); Has 134937 Blast hits to 39196 proteins in 1663 species: Archae - 308; Bacteria - 21148; Metazoa - 50725; Fungi - 18898; Plants - 23643; Viruses - 3727; Other Eukaryotes - 16488 (source: NCBI BLink).
Link
InterPro Scan - TAIR