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GT15230

CSHL Arabidopsis genetrap mutant lines

Original: GT15230

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15230

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6127900 [Map]; Strand: w
      • AT3G17900.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -606; Region: promoter
    Flanking Genome Sequence: GT15230 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TCCCATAATG GGCTTATGAA CTCAGTAGCT 
    CCTACATTCT ATAATATTTT TGGACCTCGA GATAAAAACA CAGTTTTTAT 
    AAAGATGTCG GATCTCTGGA ACAGAACTCA AAACAGTAAA AAGAAAAAAT 
    GTTGAGGCAC TTGAAAACTC AGTTGTGATT CCATTCTAAC GTTTCTTGTA 
    AAGAGGACCC ATTAGCAATT GTAACATGTC TTCTGCTGTT GAATCTTTGG 
    TTCCTCCTTG AGATGATGTA GTCATATTGG TTTCATCGAG AACTAGCGTA 
    GTTTCAGACA CTGACAAGCT TCTTTCACGC TCCTTTCTTG TTCCTTCCTC 
    ATCACGTTGG ACATACTGAG ATTCATTGTT AAGTAAATTC ACAAATCCTT 
    AATAGTAAAA ACTGTGGAAC TGAAGTATTA CATTACCTCA TTAGCAAAGC 
    TTAATAAGTC ATCAACTGTG AGATCATCAT CTTCAGGAAC AGTCACTGAT 
    TGAATCACCT CCGGGCTACG CTTAGCTTCT TCCCTAATCT TCCTGCGAAC 
    TCGTTTAGGT TC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2775013 [Map]; Strand: w
      • AT5G08560.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -341; Region: promoter
      • AT5G08560.2 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -409; Region: promoter
      • AT5G08565.2 - [+] show detail - Transcription initiation Spt4-like protein
        Distance: -884; Region: promoter
      • AT5G08565.1 - [+] show detail - Transcription initiation Spt4-like protein
        Distance: -885; Region: promoter
    Flanking Genome Sequence: GT15230 - 5-prime edge 
    CTTTCTCCCT GGTTGTGTTC AACAAGTAAT TTAATCATAT ATATAGGCGG 
    ACTAGAGAAA GGAATGCTTT GAAAACAAAT ATTTGGTGCG GAAGGTATGT 
    GATTTGGCAG AATTGTCTTG TGTTTTTAGA TTGTGTTCAA ATCTTATGTA 
    ACATAGGCCG CCTTTATACA TCAATACGAT GCCAAAGAAA TGTCAAAGCA 
    AATAATATAT AGAAATCCAA CTAAAAGCTT GGAAGAAACA AATATTAAGG 
    GTTTCTTTTT AAAACCTTTA TGCATTGTAT TTGGTAGGTG AACTTTGAAT 
    GACAAAATAT GTGACATGGT AAAAGATTTT TGATGGCGAT ACACGTTTGA 
    CGTTTACCTT AGTCCTTAAG CTGCATGTAT TGGTTTAGGC TTTAGACGTT 
    TAGTCTCGTG TTATCATACA TATGTTATAA TGCGATGCGT GGTGCAAAAT 
    CCGCATTAAT TGACCGGAAA TAGGAGAAAA TGAGCTAGTA GGAAAAAAAA 
    ATGTTATCAT CAGAAGTTTG TATATGAAAA CCCGGAAAGA AAAAAGCTTC 
    TCCAAAGACT GGTCCGCCAC GTATGACGTA TCGTTTGTGA TTCCGTTGGT 
    AGAATCGTAA TGCAAAATTA TCCAAACACG ACAAAGACGA TACACACGAA 
    TTTGCTTGAA CAATAATAAA CAAGGTTCTT TGAAGAAAAG AAAGTAATAA 
    ACTATG

AT3G17900.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G08560.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G08560.2

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G08565.1

Model type
Protein coding
Short Description
Transcription initiation Spt4-like protein
Computational Description
Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G08565.2

Model type
Protein coding
Short Description
Transcription initiation Spt4-like protein
Computational Description
Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1).
Link
InterPro Scan - TAIR