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GT15248

CSHL Arabidopsis genetrap mutant lines

Original: GT15248

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15248

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14194836 [Map]; Strand: c
      • AT2G33509.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -722; Region: promoter
      • AT2G33510.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsi...
        Distance: 0; Region: intron1 (CDS)
      • AT2G33510.2 - [+] show detail - unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellula...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15248 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCTAGAT 
    ATGATTATTC TCATAAGGAA GTAAAACAAA CAAACAAATG TTTTTGTTTT 
    TCATGTTCAA TGATTTGTCT AAAGAAATCA ATGCCGCACT ACCACAAAAC 
    ATACATACAA AAAGTACATA GTCATTTGCT CATATATAGA TCTAGGACCA 
    AAGCTTTTTG TCTTAACCAA AATTTGGGAG GTGCATTGCA ATTTGCCAAG 
    AAAGAAAAAA GATAAAACTT TATAGTAATA AGAGCACTTT ATGATTGAAT 
    TCATGAGGTG AGCTTTTTGT TTTGTTTTAG ACAGGAGAGA TTTACTACAT 
    AAACTGGAAA AACGGAATGA GAGTGAAAGA GGATCCAAGG AAAGTGATGA 
    ATGCAGATCC TGACAGTGGA GACTCATATG GAACCGTGTG TTCAGAAGAA 
    GATAGCTCAT ATTACGACAG CGAAGAGTCT TCATCAGAGT CATCTCCATC 
    ATCAAGAGAG AATCATAAAG AAGAAGAAGA AGAAGAGGAG GAAGAAGAAG 
    AAGAAGATGT GCTAGTGGTT GCTGGTTGCA AAGCTTGTTT CATGTACTTC 
    ATGGTTCCTA AGCTTGTTGA GGACTGTCCT AAATGTGCAG CACAGCTTCT 
    TCACTTTGAT CGACCTCATT CTGCATCTTC TTGAAACCCT TGTCTTTGTT 
    TGGATTTTCC CTTTATTCAG ATGAGAATTT GTTTAGGTTT CCACTTTAAT 
    CTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14194775 [Map]; Strand: c
      • AT2G33509.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -661; Region: promoter
      • AT2G33510.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsi...
        Distance: 0; Region: intron1 (CDS)
      • AT2G33510.2 - [+] show detail - unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellula...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15248 - 5-prime edge 
    ACTTTCTCCC TGTATCTAGG AGATGAAAGA TTGGCTGATA AAAAGCATCA 
    AATAGCTTTA CAAAAATTAT TTTGTTTTTA TCCAAAAGCA AAAATCCCAG 
    AATTTAGTTT CATGGTCAAG CTTTCAAACT TTTTTTAGCC ATTTAAAATC 
    TCTGCAAAAG TTTTCCATAT AAGGCAAACA TCTTTCCCTA AACACAAAGC 
    CTGAAACCAA AAAGCCCTAT GAGTAAACAT TTATACGGTC TGAAGCAATA 
    AATGCATCAC AAAGATACAA GAAAAAACAT TATATTAACA TGAAAAATTT 
    ATCCCCCAAT GTACATTTAA TGCAATCCAA AACACGAAAA CGACACGAGT 
    TCGAAGTTTC TGTAGTGATT AGTTTAACCT AGAAAGCAGA AAAAAAAGAA 
    GAAAAAAAAT AGAAAGATGA ATCTCATTTG TTTAAAGTTT ACCTTAAGAT 
    CAAGACACTG TTCCCAGTGA CAAGGAAGAG ATAAGTGAGA ATTGAGCTCC 
    AATGTTCTAT CTGAGATCGG AGTCATGTGT TCGTTGCTCG ACGATCTCCC 
    AAACCCATCT CCGACGACC

AT2G33509.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G33510.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G33510.2

Model type
Protein coding
Computational Description
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1).
Link
InterPro Scan - TAIR