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GT15253

CSHL Arabidopsis genetrap mutant lines

Original: GT15253

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15253

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17711527 [Map]; Strand: c
      • AT3G47980.1 - [+] show detail - Integral membrane HPP family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15253 - 5-prime edge 
    CTTTCTCCCA GTCCAAGTGG TGCAACCGAC ATTGAGATCC CTTTAGGGTT 
    TAGCATTTGA TCTATTCTTC CCATTATCGC CATCGCCGCA AAGGCTCCTT 
    TTCTCATTCC CAATATTGAC AATAATTCGG TTAGAGATTC ATGGTTAATA 
    AACCGAGTGA TTCAATTATT TTGCATGATG TTTTCGAATA AATGAAATGA 
    TAACACGACT TCTACTATAG ATAGATGTTT CCTTTACAAT TGACAAATTT 
    CTAACCAAAT ATTAGATAAT AAATTTATAT ATATGTGCCT CCATTCAAAG 
    ATATATATAT GATCGACGAT GACTTTTTCG AATGTGTATA TAAATATTAT 
    GAAGCTCACA ATGAATTTAA CAAATAAATA TTAGTAATCG TGATTCTTAC 
    TAAATTCAAG AATTGGTCAA CCTCGAACAG TTAGATTCAT GTATACCCTA 
    AGATCAATAG CTATCTGGTC GTTAGAAGAG ACACAATCTC TCTGTCTCTC 
    TCTCTCTCTT

AT3G47980.1

Model type
Protein coding
Short Description
Integral membrane HPP family protein
Computational Description
Integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: Integral membrane HPP family protein (TAIR:AT5G62720.1); Has 1433 Blast hits to 1433 proteins in 460 species: Archae - 0; Bacteria - 811; Metazoa - 0; Fungi - 64; Plants - 57; Viruses - 0; Other Eukaryotes - 501 (source: NCBI BLink).
Link
InterPro Scan - TAIR