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GT15256

CSHL Arabidopsis genetrap mutant lines

Original: GT15256

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15256

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9245371 [Map]; Strand: w
      • AT5G26340.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15256 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTACAT 
    GCCTACGTCT TATATAGTCG CAAACAAAAT TTTCTCCGGC ATTGACTTTT 
    AATGCGTTAT GATGATCTGT CACCTGTAAT TAATGGGCTT ACGTGTAGGC 
    CCATAACGGA GTTAAAAACT GGCCCACTAA ATAAATTTTG AAATGTTCTC 
    AGGATTAAAG GAGGTTGGGG ATGGAGGTTA TCGTTAGGTT TGGCGGGAAT 
    TCCCGCGCTT CTTCTAACGG TCGGAGCTTT ATTGGTGACA GAGACACCAA 
    ACAGTTTACT CGAAAGAGGT CGTCTCGATG AAGGTAAAGC TGTTCTTCGT 
    CGTATTCGAG GGACCGATAA TGTTGAACCA GAGTTCGCTG ATCTCCTTGA 
    AGCTAGTCGA CTTGCTAAAG AAGTTAAACA CCCTTTTAGA AACCTTCTTC 
    AACGTAGAAA CCGTCCTCAG CTCGTCATCG CCGTCGCTTT ACAGGTTAGT 
    ACTACCACTT CTCTGTTCTC TCGGAATTGG GAATCGGAAA AGTTTATCTC 
    CGATTTGGAG AGTTTGACTG AAGTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14469775 [Map]; Strand: w
      • AT2G34270.1 - [+] show detail - unknown protein; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bac...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15256 - 5-prime edge 
    GAAATCGCTA TGGATAGCAG TGATTCATAG GCAGTCTTTA GAAATATCGT 
    CATGATTTCA CGCTCTATCT GACTCTTAAA ATACATCAAA GATGTTCATT 
    AACGGTGGCG CAGTTTCTTC TTTTTCTGTA CAGTAGAAGT TTCTCTCCGG 
    AGGATCTCGA CCATTCTTCA CCATTTTCGT TACGGGAAAG AAACAAGATG 
    AGTGCGAGTG CGAGAGAGAA AATGAAAGAG CAAGAAACAA AGAATCTTAA 
    ATGCAGAGTT ACTCTGTTTC TTTTGGGCCT TTTAACTGCT TTTATTTTGG 
    CGATATTAAA CTAACAAAAG AATTAAGAAA CAATCTATTT GAACCGTCAG 
    CTCTACTCCA CGCACGCAAG ATGATATATG TTTTTGCTAA GATGAGAGCA 
    AAGCGAACAC AATAGAATAA ATTGTGGAAT CTGCATA

AT2G34270.1

Model type
Protein coding
Computational Description
unknown protein; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26340.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Curator Summary
Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.
Computational Description
MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, high-affinity hydrogen:glucose symporter activity, sugar:hydrogen symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR