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GT15279

CSHL Arabidopsis genetrap mutant lines

Original: GT15279

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15279

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5803903 [Map]; Strand: w
      • AT4G09080.1 - [+] show detail - Outer membrane OMP85 family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT15279 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTCTAG AGGTTGACGA 
    AGAAGACGAA GAAGAAGAAG AATCTAGATC TGTCTCTCTC TCTACTCGAT 
    TTCTTCAAAC TTGTAGCTCT CACACTTCTT TCTCTCTATA TTGTTTGTTA 
    CTACCGGTAA GCTCTGTTTG GAAGAAAACA TGCAATCGCA ACCGCCAAAA 
    CTTCTTTGCG TTTTGATTCT GCATTTGGGA TTCATCCTCA CTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5803974 [Map]; Strand: w
      • AT4G09080.1 - [+] show detail - Outer membrane OMP85 family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT15279 - 5-prime edge 
    CTTTCTCCCT GCTCTAGAAA CTCGTGTAGG TACGTAGCTT TGAATCTCTT 
    CTTCTGTAAC CTGAAATTTT GTTAATTCCT CTTGAGAGTG AAGCATTATC 
    GAGTTTGATC TTCGAGAAAT TGTACATAAA TCGCTTGTTT CTCTCGTGTT 
    CTTTCTTTGT ACTGATTTCA AAACTTGAAT CGCAAAGAAC AAGCGATAAG 
    ATCAAAATCA ACTACCAAAA TCACTACAGA GAGCTATTTT TCTTTGGATT 
    TTGGTTTTAA ACATGTGTTT GATTACGATT CCAGACTGAA ATTTGTATCT 
    GAGTCAGTGG ATTTTTTGGT GTTGCCTTGT TGATTCGTTC ACGTTGTAGT 
    AGTAGATTTC AGAATTTTGC TTTCGTTGCT TTGAGTTTAG CTTAGGATTT 
    GGCTTTTAAC AGAGTTTCTA TTTGAGTAGA ATTGTAAAAT AGAATTTGAT 
    GTCTGCCAAG TGTTTGATGA AATTCCTCTG AGAAATGAAC CTTAATTAAT 
    TCTAGTGTGT ATTAATGGAT TTCTTCTTTG TTGTTCAGGT TATTGTGATG 
    GAAGCTGTGA AGGAAGCTGT G

AT4G09080.1

Model type
Protein coding
Short Description
Outer membrane OMP85 family protein
Curator Summary
Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.
Computational Description
TOC75-IV; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 75-III (TAIR:AT3G46740.1); Has 439 Blast hits to 437 proteins in 90 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Link
InterPro Scan - TAIR